Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1896 ATGTGGAGCTTATCCTCCTCTTTCCTTTCTTATCCGTCGCCTAATTTCAGAGTTTCCGTTCCGGCGGCCACCCTTCGCTCCGGCACTTCTTTATCGGTGCCCCTCGATCGGCAACATTGCACTTCCGACTCCCCATTTGCTCCGGAGGTTGTTAAGGCGGTAGACTCCTTGCAGTATGAATTCAGGGCAGTGGATAATTTGGTGGCTCGTAACTCTGCTAAAGTTCTCAATGCCTTTCAGAATGCTCGGTTAGGATCTCATCATTTTGGAGGATCCACTGGTTATGGTCATGATGAAGCTGGAGGTCGTGAGGCACTTGACAATGCTTTTGCTGAGATAGTTGGAGCAGAATCCGCAATAGTCCGATCACAGTTTTTCTCAGGTACTCATGCTATTACGTGTGCTTTATTTTCACTTTTGAGGCCAGGGGATGAGCTTTTGGCAGTAGCTGGTGCTCCATACGACACACTAGAAGAGGTCATTGGGAAAAGAGATTCTCAGGGGCTGGGTTCTTTGAAAGATTTTGGAGTGGAGTATCGAGAAGTTCCACTTGCTGAGGACGGTGGACTTGACTGGGAAAAACTTGCATGTGCTTTGAAACCTCAAACAAAATGTGCGCTCATACAAAGGTCATGTGGTTATTCTTGGCGGCGAAGTTTAAGTGTTGACGAAATAGGAAAAGCAATAAGACTGATCAAGATGCAAAACCCTGATTGCTTGGTGATGGTGGATAACTGTTATGGAGAATTTGTGGAAACCACTGAACCTCCAACAGTGGGCGCGGATTTAATTGCAGGAAGTTTGATAAAAAATCCTGGTGGAACGCTTGCACCTTGTGGCGGATATGTTGCAGGTCGTGACAAATTGGTGAAGGCGGCTGCAGCCCGTTTATCTGCACCTGGCTTGGGGGTGGATTCAGGCTCTACCCCTGGTGATATCATGAGGACGTTTTTTCAAGGACTATTCCTTTCACCTCAAATGGTTGGTGAGGCAGTTAAGGGAATGATCCTAATAGCTGAAGTCATGGCATCAAAAGGCTACAAAGTGCAGCCACTTCCACGTGCACCCCGCCACGACACCGTACAGGCTGTACAACTTGGAAGTCGTGAAGTTTTGCTTGCATTCTGCGAGGCTGTACAGAGAAGCTCCCCTGTTGCTTCGTTTACTAAACCAGTTCCAGGAATAACTCCTGGCTATGCATCAGAGGTGATCTTTGCTGATGGAACTTTCATTGATGGGAGCACTAGTGAACTTTCTTGCGACGGACCTCTGAGAGAGCCATTTGCCGTCTTTTGCCAGGGTGGAACACATTGGACCCAGTGGGGCTTAGTTTTAGGAGAGAGTGTACGAGGCTTAGTTGGCTTCGCTTTAATGTATGGTACCTCTAGTATGCAAGGGTCGGAGCGGAAACCTTGCCTAGAAAATTTACCGGGATCAGGAATCAAGCATTGGAATCTCCAAAAACAGCCAAAGAAATTTCAATCTGTCTGCAGATCTCATTTCTTTGTAACCTCAGTGGTTAACATATCAGCAATCACAATGGATTATGGACAGATGATTTTTCTTGGAGTTACTTCCTCTGTTGTTCTCACGGCAGTATTCTCATTATGGCTCCTTACCCAACATCTGTCCAACTGGAAAAAACCAGCGGAACAAAAGGCCATTGTTATTATAATTCTTATGGCTCCTTTATATGCCGGTATCTCCTACATTGGTCTGTTGGAATTTATGGCAAGCAGTACTTTCTTTTTGTTTTTGGAATCAATTAAGGAATGTTATGAAGCTTTGGTGATATCTAAGTTCTTGAGTTTACTCTACAGCTACTTGAATATATCCATAAGCAAAAACATTGTGCCAGATGAGATCAAAGGTAGAGAAATCCACCATACTTTTCCAATGACCCTCTTTCAGCCTCACAGTGCTCGATTGAATCATCACACGTTGAAGCTTCTCAAGAACTGGACCTATCAATTTGTGGTGATTCGTCCTGTATGTTCCATCTTGATGATTGCTCTTCAACTAATTGATGTATATCCAAGCTGGCTCAGTTGGACATTTACTATCATATTAAATGTCTCTGTGTCACTTGCACTGTATTCTCTGGTGGTTTTCTATCATGTATTTGATAAGGAGTTGAAACCACATAGCCCTCTTGCGAAGTTCTTGTGCATCAAAGGGATTGTCTTTTTCTGCTTCTGGCAGGGAATCGTTCTTGAGATGCTTGCTGCAGTGGGCATAATCAAAGCAGAGCATACCTGGTTTGATGTTGAACACATAAATGAAGCCTTACAAAATACTCTAGTTTGTGTGGAGATGGTTTTCTTTGCGATGATTCAGATGTCTGCATACAGTGCTAGCCCCTACAAATCTAAATCTGCAGCAAAATCTAAAGTGGAGAAGAAGGATGAGTGA 2412 44.28 MWSLSSSFLSYPSPNFRVSVPAATLRSGTSLSVPLDRQHCTSDSPFAPEVVKAVDSLQYEFRAVDNLVARNSAKVLNAFQNARLGSHHFGGSTGYGHDEAGGREALDNAFAEIVGAESAIVRSQFFSGTHAITCALFSLLRPGDELLAVAGAPYDTLEEVIGKRDSQGLGSLKDFGVEYREVPLAEDGGLDWEKLACALKPQTKCALIQRSCGYSWRRSLSVDEIGKAIRLIKMQNPDCLVMVDNCYGEFVETTEPPTVGADLIAGSLIKNPGGTLAPCGGYVAGRDKLVKAAAARLSAPGLGVDSGSTPGDIMRTFFQGLFLSPQMVGEAVKGMILIAEVMASKGYKVQPLPRAPRHDTVQAVQLGSREVLLAFCEAVQRSSPVASFTKPVPGITPGYASEVIFADGTFIDGSTSELSCDGPLREPFAVFCQGGTHWTQWGLVLGESVRGLVGFALMYGTSSMQGSERKPCLENLPGSGIKHWNLQKQPKKFQSVCRSHFFVTSVVNISAITMDYGQMIFLGVTSSVVLTAVFSLWLLTQHLSNWKKPAEQKAIVIIILMAPLYAGISYIGLLEFMASSTFFLFLESIKECYEALVISKFLSLLYSYLNISISKNIVPDEIKGREIHHTFPMTLFQPHSARLNHHTLKLLKNWTYQFVVIRPVCSILMIALQLIDVYPSWLSWTFTIILNVSVSLALYSLVVFYHVFDKELKPHSPLAKFLCIKGIVFFCFWQGIVLEMLAAVGIIKAEHTWFDVEHINEALQNTLVCVEMVFFAMIQMSAYSASPYKSKSAAKSKVEKKDE 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31654145 31664702 + CcPI632755_11g018960.1 Cco11g1896 193132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1896 803 Gene3D - 307 453 - -
Cco11g1896 803 Gene3D - 47 97 - -
Cco11g1896 803 PANTHER CYS OR MET METABOLISM PYRIDOXAL-PHOSPHATE-DEPENDENT ENZYME 1 450 IPR009651 -
Cco11g1896 803 SUPERFAMILY PLP-dependent transferases 82 424 IPR015424 -
Cco11g1896 803 SMART Solute_trans_a_2 520 788 IPR005178 -
Cco11g1896 803 Gene3D - 98 306 IPR015421 -
Cco11g1896 803 Pfam Organic solute transporter Ostalpha 525 788 IPR005178 -
Cco11g1896 803 Pfam Methionine gamma-lyase 52 447 IPR009651 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1896 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0790 Cco-Chr8:19715236 Cco11g1896 Cco-Chr11:31654145 1.60E-25 transposed
Cco11g1896 Cco-Chr11:31654145 Cco03g0562 Cco-Chr3:5743691 1.90E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g284 . Blo03g01523 . . . . . . . . . . . . . Cpe06g00715 . Bhi09g01998 Tan01g4450 . . Hepe01g1356 Mch11g1110 . Cla11g01800 Cam11g1866 Cec11g1890 Cco11g1896 Clacu11g2029 Cmu11g1835 Cre11g2242 . . . . Lsi04g01284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006193 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 5 1 34