Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco11g1900 | ATGAATGAAGAAGGAGAAGGCGTTGGTCTCCCGAGTCTGTTTCCTGAGATTGTTCTGTGTTTTTCTCCTTCAAAAGTCATCCGAATTTTGCCTTACCTTCGAGAGGCTGGTGTTTTTTGGGTTGAGAGTGTGGTGAATTTGGGGTGGTATTCTGTGAAATTTTGGAATTTGAAGTACTGGGGTTTTGGCAAAATGATGTTATCCGCGTCGCCTTCGGCAATAGCTCGAAGCTCACTGGAGGAAATGCTTGATTCTCTTCGACGAAGGGATGAGATTGAGAAGCCTAAAGACTTGCCGCCTGCATTGCCGTCTCGGCCCACTTCGAAGGCTCGGATTCCGCCGGTGAAGCGGGCTTTACCCGTCAATTTCAGGGTTAATGATGACGGTTCCTCAGAGTGCTCTATTAATGTCTTTAATGGAAGGGAAGATGCAATGAGGAAGGAGAATGGTTTGGGTAACTTTGCATTCAGGAGAATAAAGGGAGATCAAGACGATGAATCGCCTTACATGGTAGCTTCAGAAAATGATAATATAGATCAAGTGTATGGCTCGAATGGTGCTTCTGCTTTACTTTCAAATATTCAAGGGTCGAACTGGGAGGACAATATCAGTTATTTTCTTCATAAGAAACTCCGGGTTTGGTGTCAACTTCCAACTGGACAATGGGAGTTAGCAACTATACAGTCAAACAGTGGGGTGGAGGCATCTGTCATGCTCTCAAACAAAAAGGTTGTTAAAGTTTCAACAGTAGATCTTTTACCTGCTAATCCAGATATAGTGGAGGGGGTTGATGATCTTGCACAGCTCGGTTATTTGAACGAGCCTTCGGTTATTCACAGTCTCCAGAGAAGATTTTCTCGGGATAAAATTTATAGTAATGCTGGGTCAGTTTTGATTGCAGTCAATCCGTTGAAAGACACTAAACAGTATGGAAATGGATTAATTACAGCCTATAGACAGAGAGTCATGAATGACCCTCATGTTTATGCTATAGCTGATTCTGCCTATTCTGCGATGATGCAAGATGAAGTTAATCAATCTATTATCATCAGTGGAGAAAGTGGAGCTGGAAAAACTGAGACAGCGAAAGCTGCAGTTCAATACCTGGCTGCTCTTGGTGGCGGCAGTGGCATAGATGATAGAATCCCACAGTCGAATGTTATACTGGAAGCATTTGGGAATGCTAAAACCTCCAGAAACAACAATGCTAGCAGATTTGGGAAGTTGATTGAAATTCTTTTTAGCAGAACAGGGAAGATATGTGGTGCTGTAATCCAGACATTTCTGTTGGAAAAGTCAAGAGTTGTTCAGCTGGTCAATGGTGAGAGATCATTCCATGTCTTTTATCAACTTTGTGCTGGAGCACCATCTACACTTAAAGAGAAATTGAATATCAGAGTGGCTAGTGAGTACAGTTACCTTAATCACAGTGAATGCCTGGTGATTGGTGGTGTGGATGATGCACGGAAATTTCATATTCTCGTGGAAGCCCTAGATACACTTCAATTCACAAAAGAAGATCAACAGCATGCATTTGGTTTGCTTGCTGCGGTGTTGTGGATAGGAAACATTACGTTTCAAACAATTGATAGTGAAAATCATGTGGAGGTCATGGCTAATGAAGCGGTTGCAAATGCTGCCAAGCTGATGGGTTGCAGTCCTAATGAGCTTAAGTTAGTTTTGTCGACCCATAAAGAGCAATCAGGCAACGGCAGCATTGCTAAAAAATTGACATTACGCCAGGCAACCGATGCAAGAGATGCTTTGGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAAGTCACTTAAACCAAGAACGGAGCATTCTGGAAGATCCATAAATATTCTTGACTTCTATGGGTTTGAGTCATTTAAGAAGAATGGCTTCGAACAGTTTTGTATCAATTATGCAAATGAGAGACTGCAGCAGCATTTTATGCGGCACCTGTTCAAACTTCAGCAGGAGGACTATGAATTTAATGGGGTCGATGGCACAAAAGTCAACTTTGAAGACAATCAAGAGTGTTTGAATCTTATTGAGAAGAAACCTCTTGGAGTTCTAGCTTTGTTGGACGAAGAGTTAAATTTTCCCAAGGCTACAGATCTTACATTTGCTAATAAACTAAAGCAACACTTTAAGTCTCAACCTCGCTTTAAAGGGGAAAGAGGTAGAGCTTTTGGTATTCGCCATTATGCTGGAGAGGTTGTATACGATACAAATGGGTTTTTGGAGAAGAATAGAGATCTGCTGCATTCTGATTCCATCCAACTCTTTTCATCATGTACTTGCAAGCTACTGCAATTACTTGCCTCAAAACTGATTAACCATTCCCAGAAACCAACAGTTTCAATGTGCTCTACAGAAGTAGTAGAATCCCCCGAGCCAGGTGTTGGTACCAAGTACAAGCTTCTACTATTTGACCTATTTCATAAATTGGAGTACACCAGCCATCATTTCATTTGTTGCATAAGGCCGAACAGAAATCAAGTTGGTGGCTTATTTGAGGAGGACCTTGTCCTACAACAGCTTCGGTACTGTGGAATTTTGGAAGTTGTGAGAATTTCGAGATCTGGATATCCTACCAGAATGATGCATCGCGAATTTGCTGGAAGGTATGGATTCCTCCTTAAAGAAACTGGTGTATCTCGAGATCCATTGAGTATATCAATTGCTGTTCTACAACAATTTAATGTCCACCCCGAGATGTACCACGTTGGTTATACCAAACTATTTTTCCGAACTGGGCAGATTAGGGCATTGGATGAAAGGAGGAAGCAAGTTATGCAAGGCATCCTAGGGGTACAAAAGTACTTTCGTGGTTGCCATTCCCGTGGCAACTTCCATGATCTTAAGCAAGGGGCCACTACCTTACAATCATTTATTCGTGGTGAAAATGCCAGAAGGAGATGTACCGTTAAGGTGAAGAGGTTCTCATTCATTGTGTATGCTTTTAGCGTTCCTAAGAAGGCTTACGAACTCCAGGGAATCATATGTTTACAATCTGTCATACGTGGTTCATTGGCTCGAAAGCATTTTCTGAGCATGCTTGATTCAAAGAGGGATTTTCCTGAAAACAAGAAATCTAAACTGACAACAGGCAGAAGGGTTTCAGAGGAAGAATTTCAAGAACGGGTTCAATCCTTGCCAACAACTCTGACTGAGCTTCAAAAGAGGGTCCTGGAGGCAGAAGCAACCATAGAGAAAAAGGAAGGGGAAAATGCTGCACTGCGGGAGCAAGTAAAACAATTCGAGTCTAGGCGGTTAGAATATGAAGCCAAGATGAAGTCCATGGAGGATATGTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAAAAAGACTCTTGCTGCTGAAAATGTAGCCTGTCCACCAGGAAGAGTTGATGCTGGTAACTCACCACCTCACTATTATGATTCTGAGGATACGACGTCAATGGGATCCCGAACACCTGGTGGTACCACACCTATAAAGGCTTCTGGAATTTCTGAAGTTGGAGCAGGCCGAGAAATGAATGGTACTTTAGTGGCAGTGAACAATCTTGTAAAGGAATTTGAACAGCGAAGAACTGCATTTGACGATGATGCCAAAGCTTTAATTGAAGCAAAATCAGGTCAGGCACAGACAGGGTCTAATTTAAATCCAGATGAAGAATACCGTAAAATTAAAGTCCGATTTGAGGCATGGAAAAAAGAGTACAAGGCTAGATTAAGGGAAACAAAAGCTAAGTTCAGCTTTGTGAATGAATGGAGAGCTCTTGAAAAGAAGGGGGAGAAAACTGTTGAGTTGTCTTTTGACAACATGTGGGTGTTGAAGCTGAACCTGGTAAAGCCGAGAAATGTGTCGCCCGTTCGTGGGATGGAAGGAGAGTGTTCAGAAGATTGTGTATAG | 3921 | 42.16 | MNEEGEGVGLPSLFPEIVLCFSPSKVIRILPYLREAGVFWVESVVNLGWYSVKFWNLKYWGFGKMMLSASPSAIARSSLEEMLDSLRRRDEIEKPKDLPPALPSRPTSKARIPPVKRALPVNFRVNDDGSSECSINVFNGREDAMRKENGLGNFAFRRIKGDQDDESPYMVASENDNIDQVYGSNGASALLSNIQGSNWEDNISYFLHKKLRVWCQLPTGQWELATIQSNSGVEASVMLSNKKVVKVSTVDLLPANPDIVEGVDDLAQLGYLNEPSVIHSLQRRFSRDKIYSNAGSVLIAVNPLKDTKQYGNGLITAYRQRVMNDPHVYAIADSAYSAMMQDEVNQSIIISGESGAGKTETAKAAVQYLAALGGGSGIDDRIPQSNVILEAFGNAKTSRNNNASRFGKLIEILFSRTGKICGAVIQTFLLEKSRVVQLVNGERSFHVFYQLCAGAPSTLKEKLNIRVASEYSYLNHSECLVIGGVDDARKFHILVEALDTLQFTKEDQQHAFGLLAAVLWIGNITFQTIDSENHVEVMANEAVANAAKLMGCSPNELKLVLSTHKEQSGNGSIAKKLTLRQATDARDALAKFIYASLFDWLVEQINKSLKPRTEHSGRSINILDFYGFESFKKNGFEQFCINYANERLQQHFMRHLFKLQQEDYEFNGVDGTKVNFEDNQECLNLIEKKPLGVLALLDEELNFPKATDLTFANKLKQHFKSQPRFKGERGRAFGIRHYAGEVVYDTNGFLEKNRDLLHSDSIQLFSSCTCKLLQLLASKLINHSQKPTVSMCSTEVVESPEPGVGTKYKLLLFDLFHKLEYTSHHFICCIRPNRNQVGGLFEEDLVLQQLRYCGILEVVRISRSGYPTRMMHREFAGRYGFLLKETGVSRDPLSISIAVLQQFNVHPEMYHVGYTKLFFRTGQIRALDERRKQVMQGILGVQKYFRGCHSRGNFHDLKQGATTLQSFIRGENARRRCTVKVKRFSFIVYAFSVPKKAYELQGIICLQSVIRGSLARKHFLSMLDSKRDFPENKKSKLTTGRRVSEEEFQERVQSLPTTLTELQKRVLEAEATIEKKEGENAALREQVKQFESRRLEYEAKMKSMEDMWQKQMASLQMSLAAAKKTLAAENVACPPGRVDAGNSPPHYYDSEDTTSMGSRTPGGTTPIKASGISEVGAGREMNGTLVAVNNLVKEFEQRRTAFDDDAKALIEAKSGQAQTGSNLNPDEEYRKIKVRFEAWKKEYKARLRETKAKFSFVNEWRALEKKGEKTVELSFDNMWVLKLNLVKPRNVSPVRGMEGECSEDCV | 1306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 31701923 | 31713533 | + | CcPI632755_11g019000.1 | Cco11g1900 | 193136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco11g1900 | 1306 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 500 | 608 | - | - | |
| Cco11g1900 | 1306 | SMART | iq_5 | 956 | 978 | IPR000048 | GO:0005515(InterPro) | |
| Cco11g1900 | 1306 | SMART | iq_5 | 933 | 955 | IPR000048 | GO:0005515(InterPro) | |
| Cco11g1900 | 1306 | SMART | iq_5 | 998 | 1020 | IPR000048 | GO:0005515(InterPro) | |
| Cco11g1900 | 1306 | Gene3D | - | 443 | 499 | - | - | |
| Cco11g1900 | 1306 | Pfam | Myosin head (motor domain) | 263 | 920 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco11g1900 | 1306 | ProSiteProfiles | IQ motif profile. | 957 | 985 | - | - | |
| Cco11g1900 | 1306 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 208 | 257 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco11g1900 | 1306 | CDD | MYSc_Myo8 | 275 | 920 | IPR036022 | - | |
| Cco11g1900 | 1306 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 241 | 980 | IPR027417 | - | |
| Cco11g1900 | 1306 | ProSiteProfiles | IQ motif profile. | 999 | 1028 | - | - | |
| Cco11g1900 | 1306 | Pfam | IQ calmodulin-binding motif | 960 | 977 | IPR000048 | GO:0005515(InterPro) | |
| Cco11g1900 | 1306 | Pfam | IQ calmodulin-binding motif | 1002 | 1019 | IPR000048 | GO:0005515(InterPro) | |
| Cco11g1900 | 1306 | Gene3D | - | 938 | 983 | - | - | |
| Cco11g1900 | 1306 | Coils | Coil | 1059 | 1107 | - | - | |
| Cco11g1900 | 1306 | PRINTS | Myosin heavy chain signature | 291 | 310 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco11g1900 | 1306 | PRINTS | Myosin heavy chain signature | 619 | 647 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco11g1900 | 1306 | PRINTS | Myosin heavy chain signature | 387 | 414 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco11g1900 | 1306 | PRINTS | Myosin heavy chain signature | 345 | 370 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco11g1900 | 1306 | PRINTS | Myosin heavy chain signature | 672 | 700 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco11g1900 | 1306 | Gene3D | - | 631 | 822 | - | - | |
| Cco11g1900 | 1306 | ProSiteProfiles | Myosin motor domain profile. | 261 | 932 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco11g1900 | 1306 | PANTHER | MYOSIN | 212 | 1266 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Cco11g1900 | 1306 | Gene3D | - | 866 | 933 | - | - | |
| Cco11g1900 | 1306 | Gene3D | Kinesin motor domain | 260 | 865 | IPR036961 | - | |
| Cco11g1900 | 1306 | FunFam | Myosin heavy chain | 443 | 499 | - | - | |
| Cco11g1900 | 1306 | SMART | MYSc_2a | 255 | 933 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g1533 | Cco-Chr2:27976250 | Cco11g1900 | Cco-Chr11:31701923 | 7.10E-307 | dispersed | |
| Cco09g0782 | Cco-Chr9:7205743 | Cco11g1900 | Cco-Chr11:31701923 | 3.50E-138 | dispersed | |
| Cco11g1900 | Cco-Chr11:31701923 | Cco05g0432 | Cco-Chr5:3531561 | 4.60E-150 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco11g1900 | K10357 | - | csv:101210624 | 2114.35 |