Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1900 ATGAATGAAGAAGGAGAAGGCGTTGGTCTCCCGAGTCTGTTTCCTGAGATTGTTCTGTGTTTTTCTCCTTCAAAAGTCATCCGAATTTTGCCTTACCTTCGAGAGGCTGGTGTTTTTTGGGTTGAGAGTGTGGTGAATTTGGGGTGGTATTCTGTGAAATTTTGGAATTTGAAGTACTGGGGTTTTGGCAAAATGATGTTATCCGCGTCGCCTTCGGCAATAGCTCGAAGCTCACTGGAGGAAATGCTTGATTCTCTTCGACGAAGGGATGAGATTGAGAAGCCTAAAGACTTGCCGCCTGCATTGCCGTCTCGGCCCACTTCGAAGGCTCGGATTCCGCCGGTGAAGCGGGCTTTACCCGTCAATTTCAGGGTTAATGATGACGGTTCCTCAGAGTGCTCTATTAATGTCTTTAATGGAAGGGAAGATGCAATGAGGAAGGAGAATGGTTTGGGTAACTTTGCATTCAGGAGAATAAAGGGAGATCAAGACGATGAATCGCCTTACATGGTAGCTTCAGAAAATGATAATATAGATCAAGTGTATGGCTCGAATGGTGCTTCTGCTTTACTTTCAAATATTCAAGGGTCGAACTGGGAGGACAATATCAGTTATTTTCTTCATAAGAAACTCCGGGTTTGGTGTCAACTTCCAACTGGACAATGGGAGTTAGCAACTATACAGTCAAACAGTGGGGTGGAGGCATCTGTCATGCTCTCAAACAAAAAGGTTGTTAAAGTTTCAACAGTAGATCTTTTACCTGCTAATCCAGATATAGTGGAGGGGGTTGATGATCTTGCACAGCTCGGTTATTTGAACGAGCCTTCGGTTATTCACAGTCTCCAGAGAAGATTTTCTCGGGATAAAATTTATAGTAATGCTGGGTCAGTTTTGATTGCAGTCAATCCGTTGAAAGACACTAAACAGTATGGAAATGGATTAATTACAGCCTATAGACAGAGAGTCATGAATGACCCTCATGTTTATGCTATAGCTGATTCTGCCTATTCTGCGATGATGCAAGATGAAGTTAATCAATCTATTATCATCAGTGGAGAAAGTGGAGCTGGAAAAACTGAGACAGCGAAAGCTGCAGTTCAATACCTGGCTGCTCTTGGTGGCGGCAGTGGCATAGATGATAGAATCCCACAGTCGAATGTTATACTGGAAGCATTTGGGAATGCTAAAACCTCCAGAAACAACAATGCTAGCAGATTTGGGAAGTTGATTGAAATTCTTTTTAGCAGAACAGGGAAGATATGTGGTGCTGTAATCCAGACATTTCTGTTGGAAAAGTCAAGAGTTGTTCAGCTGGTCAATGGTGAGAGATCATTCCATGTCTTTTATCAACTTTGTGCTGGAGCACCATCTACACTTAAAGAGAAATTGAATATCAGAGTGGCTAGTGAGTACAGTTACCTTAATCACAGTGAATGCCTGGTGATTGGTGGTGTGGATGATGCACGGAAATTTCATATTCTCGTGGAAGCCCTAGATACACTTCAATTCACAAAAGAAGATCAACAGCATGCATTTGGTTTGCTTGCTGCGGTGTTGTGGATAGGAAACATTACGTTTCAAACAATTGATAGTGAAAATCATGTGGAGGTCATGGCTAATGAAGCGGTTGCAAATGCTGCCAAGCTGATGGGTTGCAGTCCTAATGAGCTTAAGTTAGTTTTGTCGACCCATAAAGAGCAATCAGGCAACGGCAGCATTGCTAAAAAATTGACATTACGCCAGGCAACCGATGCAAGAGATGCTTTGGCAAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAAGTCACTTAAACCAAGAACGGAGCATTCTGGAAGATCCATAAATATTCTTGACTTCTATGGGTTTGAGTCATTTAAGAAGAATGGCTTCGAACAGTTTTGTATCAATTATGCAAATGAGAGACTGCAGCAGCATTTTATGCGGCACCTGTTCAAACTTCAGCAGGAGGACTATGAATTTAATGGGGTCGATGGCACAAAAGTCAACTTTGAAGACAATCAAGAGTGTTTGAATCTTATTGAGAAGAAACCTCTTGGAGTTCTAGCTTTGTTGGACGAAGAGTTAAATTTTCCCAAGGCTACAGATCTTACATTTGCTAATAAACTAAAGCAACACTTTAAGTCTCAACCTCGCTTTAAAGGGGAAAGAGGTAGAGCTTTTGGTATTCGCCATTATGCTGGAGAGGTTGTATACGATACAAATGGGTTTTTGGAGAAGAATAGAGATCTGCTGCATTCTGATTCCATCCAACTCTTTTCATCATGTACTTGCAAGCTACTGCAATTACTTGCCTCAAAACTGATTAACCATTCCCAGAAACCAACAGTTTCAATGTGCTCTACAGAAGTAGTAGAATCCCCCGAGCCAGGTGTTGGTACCAAGTACAAGCTTCTACTATTTGACCTATTTCATAAATTGGAGTACACCAGCCATCATTTCATTTGTTGCATAAGGCCGAACAGAAATCAAGTTGGTGGCTTATTTGAGGAGGACCTTGTCCTACAACAGCTTCGGTACTGTGGAATTTTGGAAGTTGTGAGAATTTCGAGATCTGGATATCCTACCAGAATGATGCATCGCGAATTTGCTGGAAGGTATGGATTCCTCCTTAAAGAAACTGGTGTATCTCGAGATCCATTGAGTATATCAATTGCTGTTCTACAACAATTTAATGTCCACCCCGAGATGTACCACGTTGGTTATACCAAACTATTTTTCCGAACTGGGCAGATTAGGGCATTGGATGAAAGGAGGAAGCAAGTTATGCAAGGCATCCTAGGGGTACAAAAGTACTTTCGTGGTTGCCATTCCCGTGGCAACTTCCATGATCTTAAGCAAGGGGCCACTACCTTACAATCATTTATTCGTGGTGAAAATGCCAGAAGGAGATGTACCGTTAAGGTGAAGAGGTTCTCATTCATTGTGTATGCTTTTAGCGTTCCTAAGAAGGCTTACGAACTCCAGGGAATCATATGTTTACAATCTGTCATACGTGGTTCATTGGCTCGAAAGCATTTTCTGAGCATGCTTGATTCAAAGAGGGATTTTCCTGAAAACAAGAAATCTAAACTGACAACAGGCAGAAGGGTTTCAGAGGAAGAATTTCAAGAACGGGTTCAATCCTTGCCAACAACTCTGACTGAGCTTCAAAAGAGGGTCCTGGAGGCAGAAGCAACCATAGAGAAAAAGGAAGGGGAAAATGCTGCACTGCGGGAGCAAGTAAAACAATTCGAGTCTAGGCGGTTAGAATATGAAGCCAAGATGAAGTCCATGGAGGATATGTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAAAAAGACTCTTGCTGCTGAAAATGTAGCCTGTCCACCAGGAAGAGTTGATGCTGGTAACTCACCACCTCACTATTATGATTCTGAGGATACGACGTCAATGGGATCCCGAACACCTGGTGGTACCACACCTATAAAGGCTTCTGGAATTTCTGAAGTTGGAGCAGGCCGAGAAATGAATGGTACTTTAGTGGCAGTGAACAATCTTGTAAAGGAATTTGAACAGCGAAGAACTGCATTTGACGATGATGCCAAAGCTTTAATTGAAGCAAAATCAGGTCAGGCACAGACAGGGTCTAATTTAAATCCAGATGAAGAATACCGTAAAATTAAAGTCCGATTTGAGGCATGGAAAAAAGAGTACAAGGCTAGATTAAGGGAAACAAAAGCTAAGTTCAGCTTTGTGAATGAATGGAGAGCTCTTGAAAAGAAGGGGGAGAAAACTGTTGAGTTGTCTTTTGACAACATGTGGGTGTTGAAGCTGAACCTGGTAAAGCCGAGAAATGTGTCGCCCGTTCGTGGGATGGAAGGAGAGTGTTCAGAAGATTGTGTATAG 3921 42.16 MNEEGEGVGLPSLFPEIVLCFSPSKVIRILPYLREAGVFWVESVVNLGWYSVKFWNLKYWGFGKMMLSASPSAIARSSLEEMLDSLRRRDEIEKPKDLPPALPSRPTSKARIPPVKRALPVNFRVNDDGSSECSINVFNGREDAMRKENGLGNFAFRRIKGDQDDESPYMVASENDNIDQVYGSNGASALLSNIQGSNWEDNISYFLHKKLRVWCQLPTGQWELATIQSNSGVEASVMLSNKKVVKVSTVDLLPANPDIVEGVDDLAQLGYLNEPSVIHSLQRRFSRDKIYSNAGSVLIAVNPLKDTKQYGNGLITAYRQRVMNDPHVYAIADSAYSAMMQDEVNQSIIISGESGAGKTETAKAAVQYLAALGGGSGIDDRIPQSNVILEAFGNAKTSRNNNASRFGKLIEILFSRTGKICGAVIQTFLLEKSRVVQLVNGERSFHVFYQLCAGAPSTLKEKLNIRVASEYSYLNHSECLVIGGVDDARKFHILVEALDTLQFTKEDQQHAFGLLAAVLWIGNITFQTIDSENHVEVMANEAVANAAKLMGCSPNELKLVLSTHKEQSGNGSIAKKLTLRQATDARDALAKFIYASLFDWLVEQINKSLKPRTEHSGRSINILDFYGFESFKKNGFEQFCINYANERLQQHFMRHLFKLQQEDYEFNGVDGTKVNFEDNQECLNLIEKKPLGVLALLDEELNFPKATDLTFANKLKQHFKSQPRFKGERGRAFGIRHYAGEVVYDTNGFLEKNRDLLHSDSIQLFSSCTCKLLQLLASKLINHSQKPTVSMCSTEVVESPEPGVGTKYKLLLFDLFHKLEYTSHHFICCIRPNRNQVGGLFEEDLVLQQLRYCGILEVVRISRSGYPTRMMHREFAGRYGFLLKETGVSRDPLSISIAVLQQFNVHPEMYHVGYTKLFFRTGQIRALDERRKQVMQGILGVQKYFRGCHSRGNFHDLKQGATTLQSFIRGENARRRCTVKVKRFSFIVYAFSVPKKAYELQGIICLQSVIRGSLARKHFLSMLDSKRDFPENKKSKLTTGRRVSEEEFQERVQSLPTTLTELQKRVLEAEATIEKKEGENAALREQVKQFESRRLEYEAKMKSMEDMWQKQMASLQMSLAAAKKTLAAENVACPPGRVDAGNSPPHYYDSEDTTSMGSRTPGGTTPIKASGISEVGAGREMNGTLVAVNNLVKEFEQRRTAFDDDAKALIEAKSGQAQTGSNLNPDEEYRKIKVRFEAWKKEYKARLRETKAKFSFVNEWRALEKKGEKTVELSFDNMWVLKLNLVKPRNVSPVRGMEGECSEDCV 1306
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 31701923 31713533 + CcPI632755_11g019000.1 Cco11g1900 193136
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1900 1306 Gene3D Myosin VI head, motor domain, U50 subdomain 500 608 - -
Cco11g1900 1306 SMART iq_5 956 978 IPR000048 GO:0005515(InterPro)
Cco11g1900 1306 SMART iq_5 933 955 IPR000048 GO:0005515(InterPro)
Cco11g1900 1306 SMART iq_5 998 1020 IPR000048 GO:0005515(InterPro)
Cco11g1900 1306 Gene3D - 443 499 - -
Cco11g1900 1306 Pfam Myosin head (motor domain) 263 920 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco11g1900 1306 ProSiteProfiles IQ motif profile. 957 985 - -
Cco11g1900 1306 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 208 257 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco11g1900 1306 CDD MYSc_Myo8 275 920 IPR036022 -
Cco11g1900 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 980 IPR027417 -
Cco11g1900 1306 ProSiteProfiles IQ motif profile. 999 1028 - -
Cco11g1900 1306 Pfam IQ calmodulin-binding motif 960 977 IPR000048 GO:0005515(InterPro)
Cco11g1900 1306 Pfam IQ calmodulin-binding motif 1002 1019 IPR000048 GO:0005515(InterPro)
Cco11g1900 1306 Gene3D - 938 983 - -
Cco11g1900 1306 Coils Coil 1059 1107 - -
Cco11g1900 1306 PRINTS Myosin heavy chain signature 291 310 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco11g1900 1306 PRINTS Myosin heavy chain signature 619 647 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco11g1900 1306 PRINTS Myosin heavy chain signature 387 414 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco11g1900 1306 PRINTS Myosin heavy chain signature 345 370 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco11g1900 1306 PRINTS Myosin heavy chain signature 672 700 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco11g1900 1306 Gene3D - 631 822 - -
Cco11g1900 1306 ProSiteProfiles Myosin motor domain profile. 261 932 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco11g1900 1306 PANTHER MYOSIN 212 1266 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
Cco11g1900 1306 Gene3D - 866 933 - -
Cco11g1900 1306 Gene3D Kinesin motor domain 260 865 IPR036961 -
Cco11g1900 1306 FunFam Myosin heavy chain 443 499 - -
Cco11g1900 1306 SMART MYSc_2a 255 933 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1533 Cco-Chr2:27976250 Cco11g1900 Cco-Chr11:31701923 7.10E-307 dispersed
Cco09g0782 Cco-Chr9:7205743 Cco11g1900 Cco-Chr11:31701923 3.50E-138 dispersed
Cco11g1900 Cco-Chr11:31701923 Cco05g0432 Cco-Chr5:3531561 4.60E-150 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1900 K10357 - csv:101210624 2114.35