Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1901 ATGCGGGTCGAAGAAGAATTCTCTGTTTATTACACGAAATTAATCACAAACTCCTTGCGCGGAATAGCTGGAAGTGCTTATGATCAGAAACTTGTAACTTCATATGTGAGATTGAGGTTAACACCGTTCATAACGTTTTGTTATAACGTAGGTTCAAGGAAGTTGAAAGCTTATTGCAATGGGGGATTTATCTCGGTTTTTGTAATTCACTGCAGATTTGGGAATCTTTTTGGAAAATTTGGATTGAAAGAAATAGACGTATTTTTGGAGGAGATGAAAAATACACTTCGAATACTTGTCGCAACAGATTGCCATCTGGGCTATTTGGAGAAGGATGAAATACGGCGACATGATTCATTCAAGGCATTTGAAGAGATATGCTCAATTGCAGAACAAAAGCAGGTGGATTTTCTACTTCTTGGCGGTGACCTTTTCCATGAGAACAAGCCATCCCGATCAACATTAGTGAAGGCAATTGAGATCCTACGTCGTCATTGCCTTAATGATAAACCAGTGCATTTCCAAGTTGTTAGCGACCAAACCATGAATTTTCCAAACACATTTGGTCACGTCAACTATGAAGATCCTCATTTTAATGTTGGCTTGCCAGTATTCAGTATTCATGGAAACCACGATGATCCTGCTGGAGTGGACAACCTTTCTGCTGTTGATATTCTCTCTGCATGCAATCTTGTGAACTACTTCGGGAAAATGGTTCTTGGTGGTTCTGGTGTTGGTCAGATCACCCTCTGCCCAATTCTTATCAGAAAGGGTTCAACATCCGTGGCTTTATATGGTCTTGGAAATATTAGAGATGAAAGGCTGAACAGGATGTTCCAGACACCACATGCTGTTCAGTGGATGCGGCCTGAAGCGCAGGAGGGCTGTCAAGTGACAGACTGGTTCAACATTCTGGTACTTCATCAAAACAGAGTAAAGTCAAATCCTAAGAATGCAATAAATGAGCATTTTTTACCTCGCTTCCTGGACTTCATTGTTTGGGGACATGAACACGAATGTTTGGTTGACCCTCTGGAAGTTCCTGGGATGGGGTTTCACATCACACAACCAGGTTCCTCAGTCGCAACATCACTGATTGATGGTGAATCAAAGCCAAAACATGTCCTTTTGCTGGAAATTAAGGGTAATCAATATCGGCCAACCAAGATACCTTTGACATCTGTAAGGCCATTTGAGTACACAGAGATTGTATTGAAGGATGAGCCTGACATTGACTCTAATGATCAGAACTCAATCATCGAACACTTGGACAAAGTGGTTCAAAATTTGATTGAGAAATCTAGCAAAAGGGTTGTAAACAGATCAGAGCTCAAGCTTCCATTAGTCCGCATAAAGGTGGATTACTCTGGATTTATGACAATAAATCCTCAAAGATTTGGTCAGAAATATGTTGGGAAGGTAGCAAATCCGCAAGACATCCTTATATTCTCAAAAGCTTCAAGGAAAGGTCGCAATGAAGTGAAAATTGATGATTCTGAAAGGCTTCGTCCAGAAGAACTGAATCAACAAAATATAGAGGCTTTAGTTGCAGAAAATAATCTGAAAATGGAGATCCTTCCTGTCAATGATTTGGATGTTGCGCTGCACAATTTTGTAAATAAAGATGACAAAATGGCATTTTATTCCTGCGTGCAATACAATCTAGAAGAAACACGAAGTAAAATTGCTCAAGACGCAGATCCTTTGAAGTTTGAAGAAGAAGATTTAATTCTTAAAGACCGAGTCAAGGAGAGGAACACCCGTTCCAAGAATGATACAACATTCACATCATCTGTTCAGTCATCAAAAGATTTCGGTAGTAAAAGTTCCACGGCAGCTGGGTCTGCTGTTTCTTTCAGTGATGATGAGGATACAGTAAAAGCATCTGGGTCAAAATCCACTAGAGGTCGGAAAGTATCATCTAGGGCAGCTGATGACACTTCAATTAAAACTTCCACGCGAGGAAGGGGAAGGGGTAGAGGGAGGGGCACCAGTAGTAGCCTCAAGCAAACAACTCTTGACGCAGCTCTTGGATTTCGCCAATCACAGAGATCTGCGACTGCTGCTGTTCGAAGCATAGCCGACACTGATGCTATGAATTCTGCTTCTAGTGGAGAACCAAGGGAAAATGAAGTTGAAGAAATTAACGACAGTTCGGAAAATGACGAAAGTCTTCTCAGCAAAGGTAGAAAGCGCACTGCTCCAAGGGGTAGAGGGAGAGGATCCACTCAGTCTAAACGGGGAAGGAAATCAGACAACTCTGCAGTTCAGAGAACGTTCATGGGTAGAAATGGTGCTGATGATGACAGCGAAGATGAAGACAACGCGAGAAAGCTATTAAATAAGTCTCAGCCTCGGGTGACAAGAAATTATGGTGCACTGAGAAGACTAATGAATTATAGTAAGCATTTGGGGCCATTTTCAACTCAGACACCTTCATATTTAGCTAGAAAATTTCCAGCTGGTATCGATAGGACACTGCTGGACTCTCTGCTGATCTGCCAAGATGAGCTCTTGAGGTATTTCCTAATATACATTCAAACTTCCAGCAGAACTCAAAAGACTGCCCTCATTTCCAATGCACTAATCAACAAAAACAACAAGCAGCAAATGACAGTACTCGCAACACTCTTAATCAATTCAGGTAAATCCATTGAAGATGGTCAAAATAACTTATTGCAGAAGTAA 2688 41.22 MRVEEEFSVYYTKLITNSLRGIAGSAYDQKLVTSYVRLRLTPFITFCYNVGSRKLKAYCNGGFISVFVIHCRFGNLFGKFGLKEIDVFLEEMKNTLRILVATDCHLGYLEKDEIRRHDSFKAFEEICSIAEQKQVDFLLLGGDLFHENKPSRSTLVKAIEILRRHCLNDKPVHFQVVSDQTMNFPNTFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGQITLCPILIRKGSTSVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEGCQVTDWFNILVLHQNRVKSNPKNAINEHFLPRFLDFIVWGHEHECLVDPLEVPGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLTSVRPFEYTEIVLKDEPDIDSNDQNSIIEHLDKVVQNLIEKSSKRVVNRSELKLPLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASRKGRNEVKIDDSERLRPEELNQQNIEALVAENNLKMEILPVNDLDVALHNFVNKDDKMAFYSCVQYNLEETRSKIAQDADPLKFEEEDLILKDRVKERNTRSKNDTTFTSSVQSSKDFGSKSSTAAGSAVSFSDDEDTVKASGSKSTRGRKVSSRAADDTSIKTSTRGRGRGRGRGTSSSLKQTTLDAALGFRQSQRSATAAVRSIADTDAMNSASSGEPRENEVEEINDSSENDESLLSKGRKRTAPRGRGRGSTQSKRGRKSDNSAVQRTFMGRNGADDDSEDEDNARKLLNKSQPRVTRNYGALRRLMNYSKHLGPFSTQTPSYLARKFPAGIDRTLLDSLLICQDELLRYFLIYIQTSSRTQKTALISNALINKNNKQQMTVLATLLINSGKSIEDGQNNLLQK 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31713833 31723527 - CcPI632755_11g019010.1 Cco11g1901 193137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1901 895 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 89 762 - GO:0000014(PANTHER)|GO:0000723(PANTHER)|GO:0000724(PANTHER)|GO:0006303(PANTHER)|GO:0007095(PANTHER)|GO:0030870(PANTHER)|GO:0035861(PANTHER)|GO:0042138(PANTHER)|GO:0097552(PANTHER)
Cco11g1901 895 MobiDBLite consensus disorder prediction 695 785 - -
Cco11g1901 895 Gene3D - 92 396 IPR029052 -
Cco11g1901 895 FunFam Double-strand break repair protein 397 495 - -
Cco11g1901 895 Pfam Mre11 DNA-binding presumed domain 386 538 IPR007281 GO:0004519(InterPro)|GO:0005634(InterPro)|GO:0006302(InterPro)|GO:0030145(InterPro)
Cco11g1901 895 CDD MPP_Mre11_N 97 365 IPR041796 -
Cco11g1901 895 Gene3D Mre11, capping domain 397 495 IPR038487 -
Cco11g1901 895 FunFam Double-strand break repair protein 91 396 - -
Cco11g1901 895 MobiDBLite consensus disorder prediction 638 653 - -
Cco11g1901 895 SUPERFAMILY Metallo-dependent phosphatases 96 435 IPR029052 -
Cco11g1901 895 SMART Mre11_DNA_bind_2 385 538 IPR007281 GO:0004519(InterPro)|GO:0005634(InterPro)|GO:0006302(InterPro)|GO:0030145(InterPro)
Cco11g1901 895 Pfam Calcineurin-like phosphoesterase 96 340 IPR004843 GO:0016787(InterPro)
Cco11g1901 895 MobiDBLite consensus disorder prediction 591 624 - -
Cco11g1901 895 MobiDBLite consensus disorder prediction 764 780 - -
Cco11g1901 895 MobiDBLite consensus disorder prediction 585 670 - -
Cco11g1901 895 NCBIfam DNA repair protein (mre11) 94 485 IPR003701 GO:0004520(InterPro)|GO:0006302(InterPro)|GO:0008296(InterPro)|GO:0030870(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1901 K10865 - - csv:101217141 1313.9
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g300 . . . . . . . . . . . . . . . Cpe06g00719 . . . . . . . . Cla11g01805 Cam11g1871 . Cco11g1901 Clacu11g2035 Cmu11g1840 Cre11g2246 . . Cone14ag1088 Cone15ag1100 Lsi04g01279 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010909 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 28