Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1908 ATGGTTACAAAGCTCTTCCTGAGGCCACAATCGCTTCCTCTTACAGCCTTTACCCCGAAATTCATCTTCCCCGGTAAGCATTTTCTCCCGATATGCTTCACCTCACCGTTTTCCTCCACCATAATCCACTCCCAATCTCAATTCTCCGACCAAAGTTTCCTCTATGGACCTTCTCTTTGCAAGGGCGTCCATCCAGTTCCATCGGTTTCCAGACAGTCTCCAATCAATCATTCTCGACCTCTTCTCAAGACCCTAATCGGAAATCCGGAGAGGGAGCGTTTGCAAAACGAGGAAAGTGAAGAAGCTCTATTAGATGAAGATGCCTTCACTCGGATTTTCGACATTGCTGCACTTCGAGTTCCTTCCAGAGGCTGTTTCGAGCTTGAGAATCGGTTGCGTGGCCATCTCTTGAATTGGCCGCGGATTCGCAACATTGCTAGAGTTCCCGGCGATGAGGTCGAGGCCGAATTGGTGGAGTTTGTGGGAGAGCAGAATTGGAGCAATTCCGATGATGGAGATGGAATTGGTATTGATTCGTTGCATCGGAGAATTTATGGGAAAGCTGAGGGCGATGGGGAGCCTCTGAGTCCCGTATTGTACAGGGAAAAGCTAGTGAAAACGTTTGATTCAAAAGGATACGTGAACTTCAGACATTTGGCGAAAATGTCAAGGCCGAAGAAAAGGAAGGAGAAGATGGAAGAAGGGAGAGATGAAGGGATGAGAAGAATGGGGAAAAGTGAAGTTGCCGCCGTGGAGGTTGTGGAGAGTGAGGAACTGGAAGTGGATGATATGAAGGGATTGTTGGGAGATGAGTTTAAGGGTGGAAAATGGAGGGGTTCGACTAGATTGTTGCTTTTGGATGAACGATACGCAGACAAAGGTATTGAAGAACTTCCAGAAGCGATAAAGGCTCTGCTGAAAGAAGATACCCAAGAAAAGATGAAACCGACAACTGAGCTAGTGAGGTGCAGGCTTACTTTATTTTATGATTATTGGCAGATGAATGAGGTTTTGGAGGCTTTGCTTCCAAAGGATATGATTATTCCTTCAGCCTTTGAAACTGTTGGACATATTGCACACTTAAACCTTAGAGATGAACATCTCCCATACAATAAGCTTATAGCCAAGGTTGTTTTGGATAAAAATAAGCCAAAGATACAAACAGTGGTGAATAAGATTGATGTCATCAACAATGATTACAGGACAATGCAACTTGAGGTTTTAGCTGGGAACCACTCCCTTGTGACCACAGTAGTTGAGAATGGTTTACGATTTCATTTGGACTTGGCAACAGTGTACTGGAATTCAAGGCTCGCAACTGAGAGACACAGGCTAATAAGTGGCTTTACCTGCAATGATGTTGTTTGTGATGTCTTTGCTGGAGTTGGTCCAATATCAATATCTGCCGCAAGAATAGTAAAGAAAGTATATGCCAATGACTTGAATCCCTATGCGGTTGAGTATCTGGAAAGAAATAGTGTTGCCAATAAACTCGAGAGGAAGATTGAGGTATTTAACATGGAAGGAAGGAGATTCATCAGCGCTATTTTTGCAAGTGACAAAGCTCCCAAAATAACACAAGTTGTTATGAATTTGCCAAATGATGCTGCTGAATATCTAGATGCTTTCAAAGGAATACTAAGAGACCGGTCAGATATAGAATTTACATTGCCAATGATCCATGTTTACGGATTCTCTAAAGCTCGAGATCCAGAATTCGACTTTCATGAGAGGATAAGAATTGCACTAACTGACGTTGCAGTTGATGTGGATATGCGAAGGGTCCGACTTGTCGCACCAGGAAAATGGATGCTATGTGCTTCATTTAGACTTCCCAGAACTGTAGCTTTATCAAAGCCTACACTTAATAACATGTAA 1878 43.34 MVTKLFLRPQSLPLTAFTPKFIFPGKHFLPICFTSPFSSTIIHSQSQFSDQSFLYGPSLCKGVHPVPSVSRQSPINHSRPLLKTLIGNPERERLQNEESEEALLDEDAFTRIFDIAALRVPSRGCFELENRLRGHLLNWPRIRNIARVPGDEVEAELVEFVGEQNWSNSDDGDGIGIDSLHRRIYGKAEGDGEPLSPVLYREKLVKTFDSKGYVNFRHLAKMSRPKKRKEKMEEGRDEGMRRMGKSEVAAVEVVESEELEVDDMKGLLGDEFKGGKWRGSTRLLLLDERYADKGIEELPEAIKALLKEDTQEKMKPTTELVRCRLTLFYDYWQMNEVLEALLPKDMIIPSAFETVGHIAHLNLRDEHLPYNKLIAKVVLDKNKPKIQTVVNKIDVINNDYRTMQLEVLAGNHSLVTTVVENGLRFHLDLATVYWNSRLATERHRLISGFTCNDVVCDVFAGVGPISISAARIVKKVYANDLNPYAVEYLERNSVANKLERKIEVFNMEGRRFISAIFASDKAPKITQVVMNLPNDAAEYLDAFKGILRDRSDIEFTLPMIHVYGFSKARDPEFDFHERIRIALTDVAVDVDMRRVRLVAPGKWMLCASFRLPRTVALSKPTLNNM 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31783120 31787706 + CcPI632755_11g019080.1 Cco11g1908 193144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1908 625 Hamap tRNA (guanine(37)-N1)-methyltransferase [TRMT5]. 101 613 IPR025792 GO:0030488(InterPro)|GO:0052906(InterPro)
Cco11g1908 625 PANTHER TRNA METHYLTRANSFERASE 112 614 - GO:0002939(PANTHER)|GO:0005737(PANTHER)|GO:0008175(PANTHER)|GO:0009019(PANTHER)|GO:0030488(PANTHER)
Cco11g1908 625 Gene3D - 333 411 - -
Cco11g1908 625 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 348 613 IPR029063 -
Cco11g1908 625 FunFam tRNA (guanine(37)-N1)-methyltransferase 415 611 - -
Cco11g1908 625 ProSiteProfiles SAM-dependent methyltransferase TRM5/TYW2-type domain profile. 352 613 IPR030382 -
Cco11g1908 625 CDD AdoMet_MTases 455 506 - -
Cco11g1908 625 Gene3D Vaccinia Virus protein VP39 415 611 IPR029063 -
Cco11g1908 625 FunFam tRNA (guanine(37)-N1)-methyltransferase 334 412 - -
Cco11g1908 625 Pfam Met-10+ like-protein 351 551 IPR030382 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1908 K15429 - - csv:101209881 1082.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0281 Cco-Chr11:2806340 Cco11g1908 Cco-Chr11:31783120 4.10E-54 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g321 . . . . . . . . . . . . . . . Cpe06g00725 . . . . . . . . Cla11g01811 Cam11g1877 Cec11g1900 Cco11g1908 Clacu11g2041 Cmu11g1846 Cre11g2251 Cone6ag0106 Cone9ag0126 . . Lsi04g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010172 2 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 29