Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1919 ATGCCACGTGTCAGTCATCAATCTAAGCGCCCTCAGTGGTGGAGCGGGCATCTCACTGGTGACTGGACTTCAATGGGAAGGCCATGTGCGGACATATATCCGCTGTTTACGTCTCAATTTCGCTTATGCAGTTTGGAATTTGGATTTCTATTCCCTCTTTTCTTAATTTCCCCATCTTTTCTTTTACCTTCTTTGCTTCTAAAAAACTACGACCACCGACCCACTTCCAGACTGCGAGAAGAGTGGGGGCCGAGAGAAGCGGCGGCGTACGGCGGAGAGAGGACAGGGAGAGAGATCGCTCCGGCTACTGATGGAAGTTTTTCGAAGTTGTCTCTCTCTCGCTTGTTTAGTGGAAGCACCGGCTGGCACTCATTAGCAACTGTAACCTGTTTGATCAAAAGTCTTAAAGGAACTTTGAGAGTTCTTGATTTTGGAAGGTTGGTTTTTGCGATTCACGATCTGGGTATTGCGCTTCTTGACGGATTCTTCTCTCATTCTTTTGAAGTGAAGGAAATGGTTCGATCGGATGAGAATAACCCCGGAGTGATCGGACGGGCAAATCTCCATGGGAGTATACGAATTGGTGGTGGTGGCGGTGGCAAATTTGTGGTGGGGATGGGTCAAAACCGCACAGCTTTGAGCAGCATTAATGAAAATGTTGCAGCAGCTCCTCCTGCCCCTCATCCCTGTGCAGTCCTCAAAAGAGGCCTAGCAGAAACTGATGTTGTTGTCAACAATAAAGACCCACCGATTCCAATTCATCGACCTATCACTCGGAAGTTTGCAGCTCAGCTGGCCAATAAGCAGCAGCCACCTGTGCCTGAGGTTGATAAAAAGCCACTTGAATCTGCTCCAACTCGAAAAGAGTCTTCAGATCATCATCCCATCGTAGAGGAAGATGATTCCATGGGTGAATCAGCAGTTCCGATGTTTGTTCAACACACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAGGTGGAAATGGAAGATATAGAAGAAGAGCCAGTAATTGATATAGACAGCCGTGATAAGAAGGATCAACTAGCTGTTGTGGAGTACATTGATGACTTGTATGCTTTCTACAGGAAATCCGAGGTTTCTGGCTGTGTCCCACCAAACTACATGGCTCAACAAGCAGATATTAACGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAATTTGAGCTGATGGAAGAGACATTGTACCTAACAGTCAACCTGATTGATAGATTCTTAGCGGTTCAGTCAGTGGTGAGAAAGAAGCTTCAGCTTGTTGGAGTGACGGCCATGCTTATAGCCTGCAAGTATGAAGAGGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATATCTGACAAAGCCTACACCCGAAATGAAGTTCTGGACATGGAGAAGTTGATGATAAATACCTTACAGTTCAATCTGTCTGTTCCAACACCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCACAATCTGATAGAGAGCTGGACCTGCTCTCCTTCTTCATGGTGGAGCTGTGTCTAGTGGAATATGAAATGCTGAAGTATAGACCTTCATTAATGGCTGCTGCTGCAGTCTTCACTGCTCAATGCACAGTGAATGGCTTCAAAGAATGGAGCAAAACCAGTGAGTGGCACACTGGCTACTCACAGGAACAACTTCTGGAATGTTCAAGGCTGATGGTGGGGTTCCATCAGAAAGCAGAGACAGGGAAATTGACAGGAGTTCACAGGAAGTATTGTACATCCAAGTTTGGATATGCTGCTAGAAATTCTGGGTCCAGTTGGGTTCTTCTAGCTATTTCTGGATATCCTGTGATAGAGATTTTTGAATAG 1863 45.57 MPRVSHQSKRPQWWSGHLTGDWTSMGRPCADIYPLFTSQFRLCSLEFGFLFPLFLISPSFLLPSLLLKNYDHRPTSRLREEWGPREAAAYGGERTGREIAPATDGSFSKLSLSRLFSGSTGWHSLATVTCLIKSLKGTLRVLDFGRLVFAIHDLGIALLDGFFSHSFEVKEMVRSDENNPGVIGRANLHGSIRIGGGGGGKFVVGMGQNRTALSSINENVAAAPPAPHPCAVLKRGLAETDVVVNNKDPPIPIHRPITRKFAAQLANKQQPPVPEVDKKPLESAPTRKESSDHHPIVEEDDSMGESAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEPVIDIDSRDKKDQLAVVEYIDDLYAFYRKSEVSGCVPPNYMAQQADINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVQSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYTRNEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKAAQSDRELDLLSFFMVELCLVEYEMLKYRPSLMAAAAVFTAQCTVNGFKEWSKTSEWHTGYSQEQLLECSRLMVGFHQKAETGKLTGVHRKYCTSKFGYAARNSGSSWVLLAISGYPVIEIFE 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31872970 31881275 - CcPI632755_11g019190.1 Cco11g1919 193155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1919 620 SUPERFAMILY Cyclin-like 348 483 IPR036915 -
Cco11g1919 620 MobiDBLite consensus disorder prediction 280 301 - -
Cco11g1919 620 SMART cyclin_7 490 572 IPR013763 -
Cco11g1919 620 SMART cyclin_7 393 477 IPR013763 -
Cco11g1919 620 ProSitePatterns Cyclins signature. 388 419 IPR048258 -
Cco11g1919 620 SMART Cyclin_C_2 486 603 IPR004367 -
Cco11g1919 620 MobiDBLite consensus disorder prediction 265 301 - -
Cco11g1919 620 CDD CYCLIN_AtCycB-like_rpt1 337 481 - -
Cco11g1919 620 FunFam G2/mitotic-specific cyclin-1 463 598 - -
Cco11g1919 620 Pfam Cyclin, C-terminal domain 486 598 IPR004367 -
Cco11g1919 620 CDD CYCLIN_AtCycB-like_rpt2 486 599 - -
Cco11g1919 620 Gene3D - 372 484 - -
Cco11g1919 620 SUPERFAMILY Cyclin-like 485 599 IPR036915 -
Cco11g1919 620 Pfam Cyclin, N-terminal domain 358 484 IPR006671 -
Cco11g1919 620 Gene3D - 358 597 - -
Cco11g1919 620 PANTHER CYCLINS 334 590 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0704 Cco-Chr4:21767290 Cco11g1919 Cco-Chr11:31872970 3.10E-69 dispersed
Cco04g1866 Cco-Chr4:33318227 Cco11g1919 Cco-Chr11:31872970 2.00E-43 dispersed
Cco09g0233 Cco-Chr9:2091187 Cco11g1919 Cco-Chr11:31872970 8.00E-45 dispersed
Cco09g2483 Cco-Chr9:38966271 Cco11g1919 Cco-Chr11:31872970 1.50E-48 dispersed
Cco11g1919 Cco-Chr11:31872970 Cco04g1862 Cco-Chr4:33292378 3.90E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1919 K21777 - csv:101223199 760.37