Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1924 ATGAGACCAAGCTTTCACCCTCTGGTCAGGGCTAGAGATATGAGCTGTTTTTCTTGCATTCGTGCTCGTTGTAAAGACGCCAGCAAGGTCGAAATTGACAATGGGAGTGGAAGGGGGAAGTCATATGCAAATGAAACTGGAAAGGGGAAGGAATCGCAAACAAGAAGTGGAAACAACCGGAAATGTGGAGCTGCACGAAGCTTCCCATTTCGTGAATTGGCGACGGCTACGAGAGGTTTCAAGGAAGTGAACTTGATTGGTGAAGGGGGTTTTGGAAGAGTTTACAAAGGCCGATTAGAAACAGGCCAGGTTGTTGCGATCAAACAACTCAATCATGATGGTCTTCAGGGATATCAAGAATTCATTGTCGAAGTTCTTATGTTAAGTTTATTGCATCACTGTAATCTTGTCACGTTGATTGGTTATTGTACTGATGGAGACCAAAGACTGTTGGTCTATGAGTATATGTCGATGGGAAGCTTGGAAAACCATCTTTTTGGTTTGTCGCCTGAACGGCCACCATTGGGTTGGAACACTAGAATCAAGATTGCTCTTGGTGCAGCCCAGGGCCTTGAGTATCTTCACTGCACAGCCAATCCGCCAGTCATCTACCGTGACTTGAAATCTGCAAATATTTTACTGGATGATGACTTCAATCCAAAGCTCTCGGATTTTGGACTGGCAAAGTTAGGACCGGTTGGTGACAACACTCATGTTTCCACCAGAGTTATGGGAACGTATGGCTATTGTGCTCCGGAGTATGCCATGAGTGGCAAACTGACCCTTAAATCTGATATTTATTGCTTTGGTGTAGTTCTCCTGGAGCTAATTACAGGTAGGAAAGCTATCGACTCCACCAAGAAACCTGGAGAGCAAAATCTGGTTGCTTGGTCTCGTCCTTTTCTAAAAGACCGGAGGAAGTTCATTCAATTAGTTGACCCACTGCTGGAAGGGCGCTACCCTCTTCGTTGTCTACACCATGCAATCGCAATTGCTGCAATGTGTCTCCAGGAGCAACCAACATTCCGGCCAATTATCAGTGATATCGTTGTGGCCCTTGAGTACTTAGCTTCTCAGAGTTACTTATCAGAACAACCGAGGGACGGCATGCCTAGTCCGTCCAAGCTATCTCCTCAAGGGGACAGGAGTACCCGTCTCTGTAAGGTGCATTTGCTGGCGTTAGCAAAACCCGACCAACTCCAATCTCCTGTTTAA 1215 46.09 MRPSFHPLVRARDMSCFSCIRARCKDASKVEIDNGSGRGKSYANETGKGKESQTRSGNNRKCGAARSFPFRELATATRGFKEVNLIGEGGFGRVYKGRLETGQVVAIKQLNHDGLQGYQEFIVEVLMLSLLHHCNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFGLSPERPPLGWNTRIKIALGAAQGLEYLHCTANPPVIYRDLKSANILLDDDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLELITGRKAIDSTKKPGEQNLVAWSRPFLKDRRKFIQLVDPLLEGRYPLRCLHHAIAIAAMCLQEQPTFRPIISDIVVALEYLASQSYLSEQPRDGMPSPSKLSPQGDRSTRLCKVHLLALAKPDQLQSPV 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31943122 31945785 - CcPI632755_11g019240.1 Cco11g1924 193160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1924 404 SMART serkin_6 80 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1924 404 CDD STKc_IRAK 86 354 - -
Cco11g1924 404 MobiDBLite consensus disorder prediction 363 381 - -
Cco11g1924 404 MobiDBLite consensus disorder prediction 46 61 - -
Cco11g1924 404 Gene3D Phosphorylase Kinase; domain 1 50 155 - -
Cco11g1924 404 PANTHER OS07G0668900 PROTEIN 45 368 - -
Cco11g1924 404 ProSiteProfiles Protein kinase domain profile. 80 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1924 404 ProSitePatterns Protein kinases ATP-binding region signature. 86 108 IPR017441 GO:0005524(InterPro)
Cco11g1924 404 MobiDBLite consensus disorder prediction 363 382 - -
Cco11g1924 404 MobiDBLite consensus disorder prediction 35 63 - -
Cco11g1924 404 Gene3D Transferase(Phosphotransferase) domain 1 156 369 - -
Cco11g1924 404 FunFam Serine/threonine-protein kinase PBS1 156 369 - -
Cco11g1924 404 Pfam Protein kinase domain 81 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1924 404 FunFam probable serine/threonine-protein kinase RLCKVII 50 155 - -
Cco11g1924 404 SUPERFAMILY Protein kinase-like (PK-like) 63 354 IPR011009 -
Cco11g1924 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1093 Cco-Chr8:22692082 Cco11g1924 Cco-Chr11:31943122 1.80E-152 dispersed
Cco10g1304 Cco-Chr10:26016027 Cco11g1924 Cco-Chr11:31943122 5.10E-75 dispersed
Cco10g2058 Cco-Chr10:33962794 Cco11g1924 Cco-Chr11:31943122 3.40E-125 dispersed
Cco11g1152 Cco-Chr11:22539620 Cco11g1924 Cco-Chr11:31943122 4.30E-82 dispersed
Cco11g1924 Cco-Chr11:31943122 Cco02g0364 Cco-Chr2:3327527 6.30E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87268 PF00069 Pkinase 1.40E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1924 - - - 0.0