Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1924 | ATGAGACCAAGCTTTCACCCTCTGGTCAGGGCTAGAGATATGAGCTGTTTTTCTTGCATTCGTGCTCGTTGTAAAGACGCCAGCAAGGTCGAAATTGACAATGGGAGTGGAAGGGGGAAGTCATATGCAAATGAAACTGGAAAGGGGAAGGAATCGCAAACAAGAAGTGGAAACAACCGGAAATGTGGAGCTGCACGAAGCTTCCCATTTCGTGAATTGGCGACGGCTACGAGAGGTTTCAAGGAAGTGAACTTGATTGGTGAAGGGGGTTTTGGAAGAGTTTACAAAGGCCGATTAGAAACAGGCCAGGTTGTTGCGATCAAACAACTCAATCATGATGGTCTTCAGGGATATCAAGAATTCATTGTCGAAGTTCTTATGTTAAGTTTATTGCATCACTGTAATCTTGTCACGTTGATTGGTTATTGTACTGATGGAGACCAAAGACTGTTGGTCTATGAGTATATGTCGATGGGAAGCTTGGAAAACCATCTTTTTGGTTTGTCGCCTGAACGGCCACCATTGGGTTGGAACACTAGAATCAAGATTGCTCTTGGTGCAGCCCAGGGCCTTGAGTATCTTCACTGCACAGCCAATCCGCCAGTCATCTACCGTGACTTGAAATCTGCAAATATTTTACTGGATGATGACTTCAATCCAAAGCTCTCGGATTTTGGACTGGCAAAGTTAGGACCGGTTGGTGACAACACTCATGTTTCCACCAGAGTTATGGGAACGTATGGCTATTGTGCTCCGGAGTATGCCATGAGTGGCAAACTGACCCTTAAATCTGATATTTATTGCTTTGGTGTAGTTCTCCTGGAGCTAATTACAGGTAGGAAAGCTATCGACTCCACCAAGAAACCTGGAGAGCAAAATCTGGTTGCTTGGTCTCGTCCTTTTCTAAAAGACCGGAGGAAGTTCATTCAATTAGTTGACCCACTGCTGGAAGGGCGCTACCCTCTTCGTTGTCTACACCATGCAATCGCAATTGCTGCAATGTGTCTCCAGGAGCAACCAACATTCCGGCCAATTATCAGTGATATCGTTGTGGCCCTTGAGTACTTAGCTTCTCAGAGTTACTTATCAGAACAACCGAGGGACGGCATGCCTAGTCCGTCCAAGCTATCTCCTCAAGGGGACAGGAGTACCCGTCTCTGTAAGGTGCATTTGCTGGCGTTAGCAAAACCCGACCAACTCCAATCTCCTGTTTAA | 1215 | 46.09 | MRPSFHPLVRARDMSCFSCIRARCKDASKVEIDNGSGRGKSYANETGKGKESQTRSGNNRKCGAARSFPFRELATATRGFKEVNLIGEGGFGRVYKGRLETGQVVAIKQLNHDGLQGYQEFIVEVLMLSLLHHCNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFGLSPERPPLGWNTRIKIALGAAQGLEYLHCTANPPVIYRDLKSANILLDDDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLELITGRKAIDSTKKPGEQNLVAWSRPFLKDRRKFIQLVDPLLEGRYPLRCLHHAIAIAAMCLQEQPTFRPIISDIVVALEYLASQSYLSEQPRDGMPSPSKLSPQGDRSTRLCKVHLLALAKPDQLQSPV | 404 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31943122 | 31945785 | - | CcPI632755_11g019240.1 | Cco11g1924 | 193160 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1924 | 404 | SMART | serkin_6 | 80 | 356 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g1924 | 404 | CDD | STKc_IRAK | 86 | 354 | - | - | |
Cco11g1924 | 404 | MobiDBLite | consensus disorder prediction | 363 | 381 | - | - | |
Cco11g1924 | 404 | MobiDBLite | consensus disorder prediction | 46 | 61 | - | - | |
Cco11g1924 | 404 | Gene3D | Phosphorylase Kinase; domain 1 | 50 | 155 | - | - | |
Cco11g1924 | 404 | PANTHER | OS07G0668900 PROTEIN | 45 | 368 | - | - | |
Cco11g1924 | 404 | ProSiteProfiles | Protein kinase domain profile. | 80 | 356 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g1924 | 404 | ProSitePatterns | Protein kinases ATP-binding region signature. | 86 | 108 | IPR017441 | GO:0005524(InterPro) | |
Cco11g1924 | 404 | MobiDBLite | consensus disorder prediction | 363 | 382 | - | - | |
Cco11g1924 | 404 | MobiDBLite | consensus disorder prediction | 35 | 63 | - | - | |
Cco11g1924 | 404 | Gene3D | Transferase(Phosphotransferase) domain 1 | 156 | 369 | - | - | |
Cco11g1924 | 404 | FunFam | Serine/threonine-protein kinase PBS1 | 156 | 369 | - | - | |
Cco11g1924 | 404 | Pfam | Protein kinase domain | 81 | 349 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g1924 | 404 | FunFam | probable serine/threonine-protein kinase RLCKVII | 50 | 155 | - | - | |
Cco11g1924 | 404 | SUPERFAMILY | Protein kinase-like (PK-like) | 63 | 354 | IPR011009 | - | |
Cco11g1924 | 404 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 202 | 214 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g1093 | Cco-Chr8:22692082 | Cco11g1924 | Cco-Chr11:31943122 | 1.80E-152 | dispersed | |
Cco10g1304 | Cco-Chr10:26016027 | Cco11g1924 | Cco-Chr11:31943122 | 5.10E-75 | dispersed | |
Cco10g2058 | Cco-Chr10:33962794 | Cco11g1924 | Cco-Chr11:31943122 | 3.40E-125 | dispersed | |
Cco11g1152 | Cco-Chr11:22539620 | Cco11g1924 | Cco-Chr11:31943122 | 4.30E-82 | dispersed | |
Cco11g1924 | Cco-Chr11:31943122 | Cco02g0364 | Cco-Chr2:3327527 | 6.30E-82 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87268 | PF00069 | Pkinase | 1.40E-44 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1924 | - | - | - | 0.0 |