Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1929 ATGAAAGGCGGTAAATCGAAGACGGAGTCGAAGAAAGCAGACACCAAGCTTGCAGTGAAAAAAGGTGCAGCCAATGCGGGCAAGAAAGGAAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAATTCAATGAGGAGAATCCTAATAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGTCGGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCGGAAGAAGATGAATCTGAGAAGTCAATGTCTGAGGTGAATGATGATGAAGACGGAGATGAGGGCAGCGAAGAGGAGGATGATGACGAGTGA 450 44.89 MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEEEDDDE 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31965908 31967303 + CcPI632755_11g019290.1 Cco11g1929 193165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1929 149 CDD HMG-box_AtHMGB1-like 42 102 - -
Cco11g1929 149 MobiDBLite consensus disorder prediction 108 149 - -
Cco11g1929 149 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 139 IPR031061 -
Cco11g1929 149 Gene3D High mobility group box domain 24 127 IPR036910 -
Cco11g1929 149 MobiDBLite consensus disorder prediction 127 149 - -
Cco11g1929 149 Coils Coil 92 112 - -
Cco11g1929 149 MobiDBLite consensus disorder prediction 1 45 - -
Cco11g1929 149 MobiDBLite consensus disorder prediction 1 18 - -
Cco11g1929 149 SUPERFAMILY HMG-box 28 115 IPR036910 -
Cco11g1929 149 SMART hmgende2 40 111 IPR009071 -
Cco11g1929 149 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 41 110 IPR009071 -
Cco11g1929 149 MobiDBLite consensus disorder prediction 59 92 - -
Cco11g1929 149 Pfam HMG (high mobility group) box 41 110 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1929 K25507 - - csv:101203891 228.409
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0892 Cco-Chr4:24579345 Cco11g1929 Cco-Chr11:31965908 2.70E-27 dispersed
Cco04g2229 Cco-Chr4:35854175 Cco11g1929 Cco-Chr11:31965908 7.10E-16 dispersed
Cco10g0026 Cco-Chr10:340948 Cco11g1929 Cco-Chr11:31965908 5.50E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g85 . Blo12g00851 . Bda03g00323 Bpe02g00306 Bpe04g00284 Bma04g00290 . . . Cma01g02021 Cma09g00049 Car01g01588 . . Cpe06g00019 . . . . . . . . . . . . . . . Cone4ag2024 Cone7ag1941 Cone17ag1458 . Lsi04g01812 Csa04g02709 . . . . Bda11g00975 . . . . . Sed01g2431 Cmo01g02078 Cmo09g00052 . . . Car09g00041 . . Bhi09g02874 Tan01g5116 Cmetu06g2583 . . Mch11g0052 . Cla11g01828 Cam11g1895 Cec11g1920 Cco11g1929 Clacu11g2059 Cmu11g1864 Cre11g2271 . . Chy07g00398 .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60320 PF00505 HMG_box 7.00E-24 CL0114 Cco TR