Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1932 ATGATGGAGTGGCAGAACCAGCAGCAACAGAACCAAGCTGAGCAATTGCAAATGCAAATGCAGGTCGAGCAATTGAGCAACGCCGATGGAGTTAATGGCCTCTATGTCAAGGTGATGACCGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTTGTCGAGATGCACAAGGCAATCACTGCCCAGCAGGACCTTGCGGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCGTCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACGCCTGTGCAGCTTCAAATTCTTGAGCAGATATTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAGCATGGTCAAATTTCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCAGTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCAAACTTATGAACATTTCGTTCCCAAGTCAGGCAACATGTACTCTCAGAGAACTGATATCGGTACTGAAATACTTTCCTTTGATGCACAGTCGAATAAAGGGGAGCCCATGTTTCAGTCATTCGGATCTGGTCATATCAGTCAGATGAATCCATTACAGAATCATAGAAATAATCTGTCAAATGATAAAATGAACGTAGCGGATTACTCTCCTTACACTCCTTGTGAAGGATATCACTTGGCCGAGTGA 819 44.32 MMEWQNQQQQNQAEQLQMQMQVEQLSNADGVNGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETFQTYEHFVPKSGNMYSQRTDIGTEILSFDAQSNKGEPMFQSFGSGHISQMNPLQNHRNNLSNDKMNVADYSPYTPCEGYHLAE 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31974573 31975965 + CcPI632755_11g019320.1 Cco11g1932 193168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1932 272 Gene3D - 101 165 - -
Cco11g1932 272 CDD homeodomain 99 161 IPR001356 GO:0003677(InterPro)
Cco11g1932 272 SUPERFAMILY Homeodomain-like 98 161 IPR009057 -
Cco11g1932 272 MobiDBLite consensus disorder prediction 174 190 - -
Cco11g1932 272 Coils Coil 6 26 - -
Cco11g1932 272 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 250 IPR044559 GO:0003700(InterPro)
Cco11g1932 272 MobiDBLite consensus disorder prediction 157 192 - -
Cco11g1932 272 Pfam Homeodomain 99 159 IPR001356 GO:0003677(InterPro)
Cco11g1932 272 ProSiteProfiles 'Homeobox' domain profile. 95 160 IPR001356 GO:0003677(InterPro)
Cco11g1932 272 SMART HOX_1 97 164 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0030 Cco-Chr10:383913 Cco11g1932 Cco-Chr11:31974573 4.80E-73 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60321 PF00046 Homeodomain 8.60E-18 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1932 - - - 0.0