Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1932 | ATGATGGAGTGGCAGAACCAGCAGCAACAGAACCAAGCTGAGCAATTGCAAATGCAAATGCAGGTCGAGCAATTGAGCAACGCCGATGGAGTTAATGGCCTCTATGTCAAGGTGATGACCGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTTGTCGAGATGCACAAGGCAATCACTGCCCAGCAGGACCTTGCGGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCGTCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACGCCTGTGCAGCTTCAAATTCTTGAGCAGATATTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAGCATGGTCAAATTTCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCAGTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCAAACTTATGAACATTTCGTTCCCAAGTCAGGCAACATGTACTCTCAGAGAACTGATATCGGTACTGAAATACTTTCCTTTGATGCACAGTCGAATAAAGGGGAGCCCATGTTTCAGTCATTCGGATCTGGTCATATCAGTCAGATGAATCCATTACAGAATCATAGAAATAATCTGTCAAATGATAAAATGAACGTAGCGGATTACTCTCCTTACACTCCTTGTGAAGGATATCACTTGGCCGAGTGA | 819 | 44.32 | MMEWQNQQQQNQAEQLQMQMQVEQLSNADGVNGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETFQTYEHFVPKSGNMYSQRTDIGTEILSFDAQSNKGEPMFQSFGSGHISQMNPLQNHRNNLSNDKMNVADYSPYTPCEGYHLAE | 272 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31974573 | 31975965 | + | CcPI632755_11g019320.1 | Cco11g1932 | 193168 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1932 | 272 | Gene3D | - | 101 | 165 | - | - | |
Cco11g1932 | 272 | CDD | homeodomain | 99 | 161 | IPR001356 | GO:0003677(InterPro) | |
Cco11g1932 | 272 | SUPERFAMILY | Homeodomain-like | 98 | 161 | IPR009057 | - | |
Cco11g1932 | 272 | MobiDBLite | consensus disorder prediction | 174 | 190 | - | - | |
Cco11g1932 | 272 | Coils | Coil | 6 | 26 | - | - | |
Cco11g1932 | 272 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 2 | 250 | IPR044559 | GO:0003700(InterPro) | |
Cco11g1932 | 272 | MobiDBLite | consensus disorder prediction | 157 | 192 | - | - | |
Cco11g1932 | 272 | Pfam | Homeodomain | 99 | 159 | IPR001356 | GO:0003677(InterPro) | |
Cco11g1932 | 272 | ProSiteProfiles | 'Homeobox' domain profile. | 95 | 160 | IPR001356 | GO:0003677(InterPro) | |
Cco11g1932 | 272 | SMART | HOX_1 | 97 | 164 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g0030 | Cco-Chr10:383913 | Cco11g1932 | Cco-Chr11:31974573 | 4.80E-73 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60321 | PF00046 | Homeodomain | 8.60E-18 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1932 | - | - | - | 0.0 |