Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1933 ATGGTTTATGCAAAAGGGGGGACGAACCCTAAATCCAAGCCTAATCCGACTTATCAGCTCACGAAGAATGTGTACCCGATTGGTGGCATCCAAGTGGAATTCCCATTCCGACCATACGGTTCGCAGCTCGCGTTCATGGGCAGAGTTATATCCACCCTTGATCGAGCCCAGCGAGAGGGCCGTTGCCACGCATTGCTGGAATCTCCGACTGGAACCGGGAAGTCGCTTTCACTTCTGTGCTCGAGCCTCGCTTGGCAGAAGAACTACAAGATAAAGAATCAGGAGGCTAATTCCTGTCACTCTAAGCCCGCTCCAGAGGCTGCCACAGATCCTCTCGGTTTTGGCGGTGGATTTATTCCTGAAGTGCAGCCGTCAATGTCTGTAGATACAGAGTCATCTCTTCCAGTGCCAAACAACAAAAGTCAGAAGAAAAAAACAGCCCCGACCATATACTATGCCTCGAGGACACATTCACAGATATCACAAGTGATCCGCGAATATAAGAAAACTACCTATCGAGTGCCAATGGCAGTGTTGGCGTCAAGGAAACATTTATGCACAAATCCTTATGTAAGAGGGAAAGATAATATAGATGAAGAATGCAAACTACTTCTGAAGGATCAAGATGCAGGATGCTGTGAATTTAAAAACGCAAACAAGGTTAAAGGTCATCCAACTCTTCAGAAAGGAGGATGTCATGAGGTTCATGACATTGAAGATTTGGTGAAAGTTGGAGAAGTTGTAAAAGGTTGTTCATATTATGCAGCTCGTTCTATGTCAGACGATGCACAGCTGGTGTTCTGTCCATATAGCTATATTATCAATCCAGTTATTCGAGGAGCAATGGATGTAGATATTAAGGGTGCGATTGTGATCCTTGATGAAGCCCACAATATAGAGGATATTGCTCGTCATGCTGGTAGTGTGGATGTTGAAGAGGATACTTTAAATAAATTGCGGATGGAGTTAGAGCAACTATGTCATGTTAATTCTTTGGTTTACCAGCCTCTGTATGAAATGACACAGGATCTCATAAGTTGGATTGACCAGAGGAAGACCACATTACAGAAGCACGAGTTTCAGCATTATGTCACCTGTTGGACTGGCAATCATGCTCAAAGGGAGCTCCAAGAAGCTAATATAACTCAACAATGCTTCCCCATTTTGCTTGAATGTGCAACGAAGGCTATTAAAGCAGCTTCAGATACGGAGTCTGATGATGCACATTTGAGTGGCCTGTCAGTGATAACGCTGGAAGGGTTATTCTCTTCACTCACATATTTCTTCTCAAGAAATGGTTGCCACATGTCTGATTACCAGCTTGCATTACAACGCTATGTTAAAAGAGATCCTGGAAAAGCTTTTGGTGGCTGGACGCTTACGTTAAGTTTGTGGTGCTTGAATCCAGCTGTTGTATTTAGAGACATTGGCGATCTTTCCTTATCAGTTATTTTGACATCTGGGACCCTATCACCTATGAATTCCTTCTCATCTGAACTAGGAGTTCAGTTTGGAACTTCACTGGAAGCTCCTCATGTAATTGACGTGGAAGCTCAGGTGTGGCCAGCTATTATATCAACTGGTCCAGGAAATTATCCGCTCAATGGAAGTTATAAAACGGCCGATGGATATGCATTCCAGGATGCTCTAGGAAAATCTTTGGAGGAGATATTTTTGATCGCTCCTGGTGGCTGTCTTGTGTTCTTCCCTAGTTATAAGCTGATGGAGAAACTCCAAAGCCGTTGGTTTGAAACTGGTCAATGGTCTCGACTGAATGCAAGGAAGTCCCTTTTTGTTGAGCCAAGAGGAGGAGCTCAAGAGGATTTTGATTCCATTTTGAAAGGTTATTATGATACTATACGTCTTGGCGATAACTTTGCAGTCGGGAAGAAGAGGCGAGGTAAGAAGGTTAAACCCAATCACCCATACGTGGTTGGCTGTGAAAATCCCAAGGAAGGTGCAGCACTCCTTGCAGTTTTTCGAGGAAAGGTTTCAGAAGGAATAGACTTTTCTGATGATAATGCTAGAGTGGTTATAATAGTTGGTATTCCATTTCCAAATATAAATGATATTCAAGTTGCATTGAAAAAAAAGTTCAATGACACATATAAAATGTCCAAAAACCTTTTAAGTGGAAATGAGTGGTATTGTCAACAGGCCTTCCGAGCTTTAAATCAAGCTGCAGGACGTTGTATTCGACACAAGTTTGACTATGGTGCCATTGTGCTATTAGACGAGCGTTTCCGGGAAGAGAGGAACAGGCTGTACATTTCAAAGTGGCTAAGAAAATCCATTAAACAATTTGATAACTTTGAACAGTCTATGGAGGAGTTGAAATCCTTTTTCAGCCATATTAAGGAGCGCATTAGCAACAATACAGAGAGTGGCCTGCCAAGATCTGAGAATGAGGAGCACATTACTTCTACCTGTCCAAGTACTTGTAGAAGAAAGAAGATAGAGAAATTTGACAAGTTAAATTATCGTGGGCAGAAAGCTCATGAAGATGCAAAGAACTGTATAATTGATCTGGAGTGCAGCGTTGAAACAGAAACGAGGAACCATGAGTTTCTATCTATGAATACCGTCCTCGAAGTTCCAGATTCACCAATTGTGCAGGAGACTCCTTGTGTTGATACTGGAGGCACCACTAGTCCAGGAGACTCCAAAGATGAAAGAACGACTTCAACCATAATTGAGGCCTATTCTGAGTTTCCTGATCAATTATCTTATCATTCATTACATTTGATCAAATCAACAAGATCTCCTCTTACATCTGAATCTTCAGTTCTACATACTCCGGAAAGAAAGGTTGCTGCAAATTCATACAGCTTTGCACGAGATACAGAATCTTCTTTGAATATGAGTGTAAATTCTTATACCCAGAAAAGGAGGAAGTCTATCGGTTTAACTATTCCGAAACTTGCTCAAGAAGAGTTTGTTGATCCCAAAACCAAAAATCCTGAATGCAACAGTGTGGAAAGAAGCTCAATAATCAGCAGAAATTTGACTAGCCCAAAAGATACTAGTTATGAAGTTCTTCTCACAGAAAAGAAGTCTAAGAGTTCAAATGTCACCCAAGTGCTTAAGCTAAATGACACTGTTCCTGTTTGTCTGTCTTCTGGCCTTCCAATGGACAAAAAGTTGCATCTGTCTTGTGCACTTTGTAGAAGCCCACTTGGTTGCCCAGAAAACCATTTAAACGTAACGTGCTCATTTACCGTATCATCAAAAACACACTTAATATCAAAATATAAGGAAATGTTTAAAGCTCAAACTGCCAATTCGCCGACAAGTATACAGCTTATTATTACAGACAGCTTGTTTGTTAACCAGAGGGTCCTAGTTAGGTCTTCCAAAGATTCAGGGCGTGGTATCTGGAGTGAAGAGGATGGTTGCGTATACAATTATGTCTTTTGCCCCTTCTGTTGCACTGACAATTGTATTGGTGTACAGATCGTGGCGACTGATGCATCAAATATTCAGTTACTTAATAAAGTGATGTTTTACTTGGAGTGTTTGGAGATCCAAGACCTAAAAGCTGATACCAGAAAGGCTTCAGTAAACAAGGAATTATCACCCGTTAGTAGCTCAGCCGAGAATGGGTTTGCCGTCATGGAACCCATTGAAAATTTTTCATACTCCCCTAGCCCGCTAACCTCAGGCGGCTGGAGTTGCATCATGTACTATTTTCTAGCCATTTGTCTAGTTAATTCATCAGACGCAACTACAGGTGTACTTGAGTTCTACAACATCATTTGTGCAGTACTTGGAATACAAATCAATTTCTCAGGGAGAAGAGTCAAATACAAGGTCGGTTTCCGTTATAAATTCATTGGTTATGATTTTACCATTTTGTTTATAACTCACTTGCAGGGTTTAGATGAGTCGACAGTCTTACATCTCAGTGTAATATTTACTATGTCAGTTGTTCGCACACTCCTCCAGGATGAGCTTCAGGACAAGCAGTCAAGCACATCAGCGGAATGA 3987 41.56 MVYAKGGTNPKSKPNPTYQLTKNVYPIGGIQVEFPFRPYGSQLAFMGRVISTLDRAQREGRCHALLESPTGTGKSLSLLCSSLAWQKNYKIKNQEANSCHSKPAPEAATDPLGFGGGFIPEVQPSMSVDTESSLPVPNNKSQKKKTAPTIYYASRTHSQISQVIREYKKTTYRVPMAVLASRKHLCTNPYVRGKDNIDEECKLLLKDQDAGCCEFKNANKVKGHPTLQKGGCHEVHDIEDLVKVGEVVKGCSYYAARSMSDDAQLVFCPYSYIINPVIRGAMDVDIKGAIVILDEAHNIEDIARHAGSVDVEEDTLNKLRMELEQLCHVNSLVYQPLYEMTQDLISWIDQRKTTLQKHEFQHYVTCWTGNHAQRELQEANITQQCFPILLECATKAIKAASDTESDDAHLSGLSVITLEGLFSSLTYFFSRNGCHMSDYQLALQRYVKRDPGKAFGGWTLTLSLWCLNPAVVFRDIGDLSLSVILTSGTLSPMNSFSSELGVQFGTSLEAPHVIDVEAQVWPAIISTGPGNYPLNGSYKTADGYAFQDALGKSLEEIFLIAPGGCLVFFPSYKLMEKLQSRWFETGQWSRLNARKSLFVEPRGGAQEDFDSILKGYYDTIRLGDNFAVGKKRRGKKVKPNHPYVVGCENPKEGAALLAVFRGKVSEGIDFSDDNARVVIIVGIPFPNINDIQVALKKKFNDTYKMSKNLLSGNEWYCQQAFRALNQAAGRCIRHKFDYGAIVLLDERFREERNRLYISKWLRKSIKQFDNFEQSMEELKSFFSHIKERISNNTESGLPRSENEEHITSTCPSTCRRKKIEKFDKLNYRGQKAHEDAKNCIIDLECSVETETRNHEFLSMNTVLEVPDSPIVQETPCVDTGGTTSPGDSKDERTTSTIIEAYSEFPDQLSYHSLHLIKSTRSPLTSESSVLHTPERKVAANSYSFARDTESSLNMSVNSYTQKRRKSIGLTIPKLAQEEFVDPKTKNPECNSVERSSIISRNLTSPKDTSYEVLLTEKKSKSSNVTQVLKLNDTVPVCLSSGLPMDKKLHLSCALCRSPLGCPENHLNVTCSFTVSSKTHLISKYKEMFKAQTANSPTSIQLIITDSLFVNQRVLVRSSKDSGRGIWSEEDGCVYNYVFCPFCCTDNCIGVQIVATDASNIQLLNKVMFYLECLEIQDLKADTRKASVNKELSPVSSSAENGFAVMEPIENFSYSPSPLTSGGWSCIMYYFLAICLVNSSDATTGVLEFYNIICAVLGIQINFSGRRVKYKVGFRYKFIGYDFTILFITHLQGLDESTVLHLSVIFTMSVVRTLLQDELQDKQSSTSAE 1328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31975974 31986648 - CcPI632755_11g019330.1 Cco11g1933 193169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1933 1328 Gene3D - 531 780 IPR027417 -
Cco11g1933 1328 Pfam Helicase C-terminal domain 555 763 IPR006555 GO:0003676(InterPro)|GO:0004386(InterPro)|GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0016818(InterPro)
Cco11g1933 1328 MobiDBLite consensus disorder prediction 127 147 - -
Cco11g1933 1328 MobiDBLite consensus disorder prediction 871 891 - -
Cco11g1933 1328 CDD SF2_C_XPD 519 748 - -
Cco11g1933 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 743 IPR027417 -
Cco11g1933 1328 Pfam DEAD_2 152 316 IPR010614 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)
Cco11g1933 1328 Gene3D - 37 354 IPR027417 -
Cco11g1933 1328 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 28 344 IPR014013 GO:0005524(InterPro)
Cco11g1933 1328 SMART Cxpdneu3 572 750 IPR006555 GO:0003676(InterPro)|GO:0004386(InterPro)|GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0016818(InterPro)
Cco11g1933 1328 SMART deadxpd 30 352 IPR006554 GO:0003678(InterPro)|GO:0016818(InterPro)
Cco11g1933 1328 FunFam Fanconi anemia group J protein homolog 531 777 - -
Cco11g1933 1328 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 27 802 IPR045028 GO:0003678(PANTHER)|GO:0005634(PANTHER)|GO:0006289(PANTHER)|GO:1990918(PANTHER)
Cco11g1933 1328 FunFam Fanconi anemia group J protein-like isoform E 133 348 - -
Cco11g1933 1328 MobiDBLite consensus disorder prediction 875 891 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1933 K15362 - - csv:101217839 2225.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0202 Cco-Chr9:1816029 Cco11g1933 Cco-Chr11:31975974 1.20E-46 dispersed
Cco09g0211 Cco-Chr9:1877558 Cco11g1933 Cco-Chr11:31975974 3.00E-99 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g81 . Blo12g00850 . Bda03g00325 . Bpe04g00285 Bma04g00292 . . . . Cma09g00046 . . . Cpe06g00016 . . . . . . . . . . . . . . . Cone4ag2025 . . . Lsi04g01816 Csa04g02713 . . . . . . . . . . Sed13g2203 . Cmo09g00048 . . . Car09g00038 . . Bhi09g02869 Tan01g5121 Cmetu07g0880 . Hepe01g2348 Mch11g0049 . Cla11g01831 Cam11g1898 Cec11g1923 Cco11g1933 Clacu11g2062 Cmu11g1867 Cre11g2275 . . Chy07g00402 Cme07g00047