Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1938 ATGGCTACGGGTATAGATTTTTCACCTCCCTTCACTCTACTGGAAGGCGGCGGATACAATAAGGACAATGTATCAGCCACAGATGACGAAAGTTCTGATAGCTTTAATAGTTTGAAACAGATGAGCAGTGGGAAGCCTCCCCGACACCTCTCAGTAATGCGACATAGTCTGAGCTCCATAAAGCTCCTTGGCCAAGCTGATTTAAGCTTGGATGCTGAAACTGTTGGGAATAAGTCACCTGATGGAAAAGCGGGATACTTACCTGTCTTTAGATCGGGTAGCTGTTCAGAAAGGGGACCTAAACAGTACATGGAAGACGAGCACATATGCATAGATGATCTTGTTGAACATGTCCATGCTTGTGCAGATTTCACTTCTCCTGGAGCTTTCTATGGTGTATTTGATGGCCATGGGGGCACAGACGCTGCTGCTTTTGTTAGAAAGAACATCCTCAGATTCATAGTCGAGGACTCCTGTTTTCCAATTAGTGTGGAGAAGGCAATTAAGAGTGCTTTTTTGAAAGCTGATTATGCTTTTGCTGATGCTAGTTCTCTGGATATCTCCTCTGGCACAACTGCCCTGACTGCTTTCATTTTTGGAAGAACAATGATTATTGCGAATGCTGGGGATTGTCGAGCTGTTCTGGGGAGGAGGGGGAAGGCTATCGAGGTGTCGAAGGATCACAAGCCGAACTGTGCTTCTGAAAAGCTCAGAATTGAGAAACTGGGTGGGGTGATCTATGATGGGTACCTCAATGGCCAGCTCTCTGTTGCACGTGCTATAGGAGATTGGCACATGAAAGGTGCTAAGGGTTCTGCTTGCCCACTGAGTGCCGAGCCAGAGCTGCAGGAACTGAATTTGACGGAGGAAGATGAATTTCTAATAATGGGATGCGATGGGCTTTGGGATGTGATGAGCAGCCAGTATGCTGTTACAATGGCAAGGAAAGAGCTGATGCTACATAATGATCCAGAAAGGTGTTCAAGAGAGCTGGTAAGGGAGGCACTAAAGCGCAATACATGCGATAATTTAACTGTTATTGTGGTCTGTTTTATGGCTGATCCGCCCCCTCGGATAGAAATTCCTCAAACTCGAGTAAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAAGGTGTATTGGACTGCAATTCTTGA 1161 45.74 MATGIDFSPPFTLLEGGGYNKDNVSATDDESSDSFNSLKQMSSGKPPRHLSVMRHSLSSIKLLGQADLSLDAETVGNKSPDGKAGYLPVFRSGSCSERGPKQYMEDEHICIDDLVEHVHACADFTSPGAFYGVFDGHGGTDAAAFVRKNILRFIVEDSCFPISVEKAIKSAFLKADYAFADASSLDISSGTTALTAFIFGRTMIIANAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSACPLSAEPELQELNLTEEDEFLIMGCDGLWDVMSSQYAVTMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFMADPPPRIEIPQTRVRRSISLEGLNLLKGVLDCNS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32012260 32015521 - CcPI632755_11g019380.1 Cco11g1938 193174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1938 386 MobiDBLite consensus disorder prediction 29 44 - -
Cco11g1938 386 Gene3D - 74 354 IPR036457 -
Cco11g1938 386 SUPERFAMILY PP2C-like 85 351 IPR036457 -
Cco11g1938 386 SMART PP2C_SIG_2 106 351 IPR001932 -
Cco11g1938 386 MobiDBLite consensus disorder prediction 18 49 - -
Cco11g1938 386 SMART PP2C_4 81 349 IPR001932 -
Cco11g1938 386 PANTHER PROTEIN PHOSPHATASE 2C 68 351 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cco11g1938 386 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169(InterPro)
Cco11g1938 386 ProSiteProfiles PPM-type phosphatase domain profile. 91 351 IPR001932 -
Cco11g1938 386 Pfam Protein phosphatase 2C 92 343 IPR001932 -
Cco11g1938 386 FunFam Probable protein phosphatase 2C 22 75 354 - -
Cco11g1938 386 CDD PP2Cc 90 351 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1842 Cco-Chr2:31351442 Cco11g1938 Cco-Chr11:32012260 1.50E-88 dispersed
Cco09g0468 Cco-Chr9:4113846 Cco11g1938 Cco-Chr11:32012260 6.10E-90 dispersed
Cco11g1938 Cco-Chr11:32012260 Cco11g1461 Cco-Chr11:27421448 3.30E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1938 K14803 - csv:101205355 761.14