Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1938 | ATGGCTACGGGTATAGATTTTTCACCTCCCTTCACTCTACTGGAAGGCGGCGGATACAATAAGGACAATGTATCAGCCACAGATGACGAAAGTTCTGATAGCTTTAATAGTTTGAAACAGATGAGCAGTGGGAAGCCTCCCCGACACCTCTCAGTAATGCGACATAGTCTGAGCTCCATAAAGCTCCTTGGCCAAGCTGATTTAAGCTTGGATGCTGAAACTGTTGGGAATAAGTCACCTGATGGAAAAGCGGGATACTTACCTGTCTTTAGATCGGGTAGCTGTTCAGAAAGGGGACCTAAACAGTACATGGAAGACGAGCACATATGCATAGATGATCTTGTTGAACATGTCCATGCTTGTGCAGATTTCACTTCTCCTGGAGCTTTCTATGGTGTATTTGATGGCCATGGGGGCACAGACGCTGCTGCTTTTGTTAGAAAGAACATCCTCAGATTCATAGTCGAGGACTCCTGTTTTCCAATTAGTGTGGAGAAGGCAATTAAGAGTGCTTTTTTGAAAGCTGATTATGCTTTTGCTGATGCTAGTTCTCTGGATATCTCCTCTGGCACAACTGCCCTGACTGCTTTCATTTTTGGAAGAACAATGATTATTGCGAATGCTGGGGATTGTCGAGCTGTTCTGGGGAGGAGGGGGAAGGCTATCGAGGTGTCGAAGGATCACAAGCCGAACTGTGCTTCTGAAAAGCTCAGAATTGAGAAACTGGGTGGGGTGATCTATGATGGGTACCTCAATGGCCAGCTCTCTGTTGCACGTGCTATAGGAGATTGGCACATGAAAGGTGCTAAGGGTTCTGCTTGCCCACTGAGTGCCGAGCCAGAGCTGCAGGAACTGAATTTGACGGAGGAAGATGAATTTCTAATAATGGGATGCGATGGGCTTTGGGATGTGATGAGCAGCCAGTATGCTGTTACAATGGCAAGGAAAGAGCTGATGCTACATAATGATCCAGAAAGGTGTTCAAGAGAGCTGGTAAGGGAGGCACTAAAGCGCAATACATGCGATAATTTAACTGTTATTGTGGTCTGTTTTATGGCTGATCCGCCCCCTCGGATAGAAATTCCTCAAACTCGAGTAAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAAGGTGTATTGGACTGCAATTCTTGA | 1161 | 45.74 | MATGIDFSPPFTLLEGGGYNKDNVSATDDESSDSFNSLKQMSSGKPPRHLSVMRHSLSSIKLLGQADLSLDAETVGNKSPDGKAGYLPVFRSGSCSERGPKQYMEDEHICIDDLVEHVHACADFTSPGAFYGVFDGHGGTDAAAFVRKNILRFIVEDSCFPISVEKAIKSAFLKADYAFADASSLDISSGTTALTAFIFGRTMIIANAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSACPLSAEPELQELNLTEEDEFLIMGCDGLWDVMSSQYAVTMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFMADPPPRIEIPQTRVRRSISLEGLNLLKGVLDCNS | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 32012260 | 32015521 | - | CcPI632755_11g019380.1 | Cco11g1938 | 193174 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1938 | 386 | MobiDBLite | consensus disorder prediction | 29 | 44 | - | - | |
Cco11g1938 | 386 | Gene3D | - | 74 | 354 | IPR036457 | - | |
Cco11g1938 | 386 | SUPERFAMILY | PP2C-like | 85 | 351 | IPR036457 | - | |
Cco11g1938 | 386 | SMART | PP2C_SIG_2 | 106 | 351 | IPR001932 | - | |
Cco11g1938 | 386 | MobiDBLite | consensus disorder prediction | 18 | 49 | - | - | |
Cco11g1938 | 386 | SMART | PP2C_4 | 81 | 349 | IPR001932 | - | |
Cco11g1938 | 386 | PANTHER | PROTEIN PHOSPHATASE 2C | 68 | 351 | IPR015655 | GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER) | |
Cco11g1938 | 386 | ProSitePatterns | PPM-type phosphatase domain signature. | 130 | 138 | IPR000222 | GO:0043169(InterPro) | |
Cco11g1938 | 386 | ProSiteProfiles | PPM-type phosphatase domain profile. | 91 | 351 | IPR001932 | - | |
Cco11g1938 | 386 | Pfam | Protein phosphatase 2C | 92 | 343 | IPR001932 | - | |
Cco11g1938 | 386 | FunFam | Probable protein phosphatase 2C 22 | 75 | 354 | - | - | |
Cco11g1938 | 386 | CDD | PP2Cc | 90 | 351 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1842 | Cco-Chr2:31351442 | Cco11g1938 | Cco-Chr11:32012260 | 1.50E-88 | dispersed | |
Cco09g0468 | Cco-Chr9:4113846 | Cco11g1938 | Cco-Chr11:32012260 | 6.10E-90 | dispersed | |
Cco11g1938 | Cco-Chr11:32012260 | Cco11g1461 | Cco-Chr11:27421448 | 3.30E-32 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1938 | K14803 | - | csv:101205355 | 761.14 |