Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1939 ATGCTGTGGGTTGCGGCTAAGATAGAAAGTGATTCTCCTCCGCTTTTCGGCGATCCCGTTTCGCCTCATCCCGAGGTGGAGACCGAGTCCGGCTGCCCACTAGGGCGGAAGGGCCCACCTGTGGAGTATCGACGAGCGACTATAGATGCTGTCACTGTTGCTGCACAAAGATTGGGCCTCCAAAACATTTCATCAAGACCATCGGTTGTGAACATTGGAGCTATTTTATCTTTTAATTCTACCATTGGAAAAGTTGCTACGATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCGGATCCCAGCATTCTTCCTGGAACCGACCTTTGGTTACAAATGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTCGAAGTTTTGCAACTTATGGAGAATGAAACCGTTGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAGTTGCAGCTGAGTTCCAAGTCCCTCTGGTATCATTTTCGGCTACTGATCCTACTCTCTCTGCGCTTCAGTTTCCTTTTTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAGATGACTGCAGTTGCTGAGATTGTTGAGTATTATAGTTGGAAAGAGGTCATTGCTATATATGTCGATGATGATTATGGGTGGAATGGAGTTGCGACATTGGGCGATAAACTTGCTGAAAGGCGTTGTAAAATCACATATAAGGTGGGTATTAGTCCAGATTCTGTGGATAATCGAGCCCGAGTTATGGATCAACTTGTTAAAGTTGCACTGATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCTGGATTAGGCGCCTTAGTCTTTTCAGTGGCTAAGTACCTCCAAATGATAGGCAATGGATATGTATGGATAGCAACTGATTGGCTTTCGTCTCTATTAGACAGTGTCGTTCCTCTTCCTCTTGAGATCATGGAGTCGATGCAAGGAGTTCTTTCTCTACGACAGCACACAACAGAATCAGATAAAAAGAGAGCTTTTCTTTCCAGGTGGAATAAGTTAACAGGTGGCTCTTTAGGTCTGAATGCTTATGGTCTGTATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATCGACAAATTTTTCAATCAAGGTGGGGTCATCACACACACTAACGACTCCAAGCTGCATTTCAGTGAAAGTGGTGATCTTCATCTTGAAGCTATGACTATCTTTGATGGTGGAAACCACCTGCTGAATAACATATTGGAGAGCGATTTTGTTGGTCTGACTGGTGCCATTAAGTTTGATTTGGACAGATCCCTTCTTCATCCTGCATATGATATTATTAATGTTATTGGGACTGGATCAAGAAGGGTGGGTTACTGGTCCAACTATTCTGGTTTATCAATTGATATTCCTGAGACACTTTATTCCAAACCACCTAATCGTTCACATGCAAATCAGAAGCTGTATGAGGTGATATGGCCAGGAAATACAATAGAAAAGCCTCGAGGATGGGTATTTCCGAACAATGGGAAGCTATTAAAAATTGGAGTGCCACTTCGGGTCAGTTATAAGGAGTTTGTATCAAAAATCAAAGGGACCGAAAATTTCCAGGGTTTCTGCATCGATGTGTTTACAGCTGCTGTAAACTTATTGCCGTATGCTGTCCCGCACCAATTTATAGCCTTTGGTGATGGCCATCACAATCCAAATTACACAGATCTTGTGTACGGGATTACAACTGGCAAATTTGATGCTGTTGTTGGAGACATAGCCATTGTCACAAGCCGGACAAGGCTTGTAGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCATTCAAAAAACTCAACACTGGGGCTTGGGCTTTCCTGCATCCATTTTCTCCAGCCATGTGGATGGTCACAGCTAGTTTCTTCCTTTTTATTGGAATAGTTGTCTGGATTCTGGAGCATAGGACGAATGATGAATTCAGAGGCCCACCTAGAAGACAATGTATTACAATTTTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAAAACACAATTAGCACTCTTGGCCGCCTAGTGCTGATCATATGGCTCTTTGTGGTTTTGATAGTAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACAGGAATCGAAACCTTGAGGGAAGGTGGTGAACCGATAGGTTTCCAAGTTGGATCATTTGCTGAACGTTATCTGAGCGAGGAGCTGAACATATCTAGATCCAGGCTTGTTCCTCTTGGATCACCCGAAGAATATGCCAAGGCACTTGAGCTTGGCCCTGACAAGAAGGGGGGTGTTGCTGCTATAGTTGACGAACTTCTATATGTAGAAAGTTTCCTCTCGAGACAATGTTCATTCAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGCTGGGGTTTCGCATTCCCGCGAGATTCTCCCTTGGCCATAGACTTGTCAACGGCCATTTTGCAGCTCTCGGAGAATGGTGATCTGCAACGGATTCATGACAAATGGCTAGTGAAAAGTGCCTGCACCATGGACAATGCAGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGTCTATTTCTAATCTGTGGGATAGTTTGTTTCATTGCCCTTGCCATATATTGCTTTCAGATTATTCGTCAGCTATACCGTGCCGACGCACAAGAATCTGATCTGTCTAGCAGTAGTGGATCACATTCTAACCGCTTTCGAAGAATTATATCGATATTGGATGAGAAGAAAGAACCGTCTAAAAGGGGAAGCAAAAGAAGGAAAGTTGAGAAATCATCTGAAAATGATAAGGACGATGATAATTTGGAGGCTGATCCTTGA 2871 43.68 MLWVAAKIESDSPPLFGDPVSPHPEVETESGCPLGRKGPPVEYRRATIDAVTVAAQRLGLQNISSRPSVVNIGAILSFNSTIGKVATIAIEEAVKDVNADPSILPGTDLWLQMQNSNCSGFLGMVEVLQLMENETVAIIGPQSSVVAHISSQVAAEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVEYYSWKEVIAIYVDDDYGWNGVATLGDKLAERRCKITYKVGISPDSVDNRARVMDQLVKVALMESRVMVLHVNPGLGALVFSVAKYLQMIGNGYVWIATDWLSSLLDSVVPLPLEIMESMQGVLSLRQHTTESDKKRAFLSRWNKLTGGSLGLNAYGLYAYDSVWVVAHAIDKFFNQGGVITHTNDSKLHFSESGDLHLEAMTIFDGGNHLLNNILESDFVGLTGAIKFDLDRSLLHPAYDIINVIGTGSRRVGYWSNYSGLSIDIPETLYSKPPNRSHANQKLYEVIWPGNTIEKPRGWVFPNNGKLLKIGVPLRVSYKEFVSKIKGTENFQGFCIDVFTAAVNLLPYAVPHQFIAFGDGHHNPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPFKKLNTGAWAFLHPFSPAMWMVTASFFLFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPITGIETLREGGEPIGFQVGSFAERYLSEELNISRSRLVPLGSPEEYAKALELGPDKKGGVAAIVDELLYVESFLSRQCSFRVVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLVKSACTMDNAELESDRLQLKSFWGLFLICGIVCFIALAIYCFQIIRQLYRADAQESDLSSSSGSHSNRFRRIISILDEKKEPSKRGSKRRKVEKSSENDKDDDNLEADP 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32016696 32025796 + CcPI632755_11g019390.1 Cco11g1939 193175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1939 956 Gene3D - 88 434 - -
Cco11g1939 956 SUPERFAMILY Periplasmic binding protein-like II 484 849 - -
Cco11g1939 956 FunFam Glutamate receptor 185 339 - -
Cco11g1939 956 MobiDBLite consensus disorder prediction 921 948 - -
Cco11g1939 956 Pfam Receptor family ligand binding region 88 444 IPR001828 -
Cco11g1939 956 Pfam Bacterial extracellular solute-binding proteins, family 3 524 626 IPR001638 -
Cco11g1939 956 CDD PBP1_GABAb_receptor_plant 71 460 IPR044440 -
Cco11g1939 956 SUPERFAMILY Periplasmic binding protein-like I 65 498 IPR028082 -
Cco11g1939 956 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 70 925 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cco11g1939 956 Gene3D - 185 459 - -
Cco11g1939 956 Gene3D - 497 615 - -
Cco11g1939 956 FunFam Glutamate receptor 743 851 - -
Cco11g1939 956 Pfam Ligand-gated ion channel 848 879 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cco11g1939 956 Gene3D - 777 854 - -
Cco11g1939 956 MobiDBLite consensus disorder prediction 14 38 - -
Cco11g1939 956 FunFam Glutamate receptor 501 617 - -
Cco11g1939 956 FunFam Glutamate receptor 617 747 - -
Cco11g1939 956 PIRSF IGluLR_plant 46 955 IPR017103 -
Cco11g1939 956 SMART GluR_14 507 849 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cco11g1939 956 MobiDBLite consensus disorder prediction 921 956 - -
Cco11g1939 956 CDD GluR_Plant 504 847 - -
Cco11g1939 956 Gene3D - 616 744 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0936 Cco-Chr2:11346367 Cco11g1939 Cco-Chr11:32016696 3.60E-282 dispersed
Cco02g0939 Cco-Chr2:11389427 Cco11g1939 Cco-Chr11:32016696 5.20E-281 dispersed
Cco02g0940 Cco-Chr2:11448201 Cco11g1939 Cco-Chr11:32016696 5.90E-261 dispersed
Cco08g1122 Cco-Chr8:22975868 Cco11g1939 Cco-Chr11:32016696 3.00E-138 dispersed
Cco08g1647 Cco-Chr8:27949165 Cco11g1939 Cco-Chr11:32016696 6.40E-15 dispersed
Cco11g1823 Cco-Chr11:30901462 Cco11g1939 Cco-Chr11:32016696 2.20E-104 dispersed
Cco04g1873 Cco-Chr4:33351556 Cco11g1939 Cco-Chr11:32016696 0.00E+00 transposed
Cco06g1477 Cco-Chr6:25261646 Cco11g1939 Cco-Chr11:32016696 4.10E-87 transposed
Cco07g1436 Cco-Chr7:28452330 Cco11g1939 Cco-Chr11:32016696 1.10E-132 transposed
Cco11g1939 Cco-Chr11:32016696 Cco02g0355 Cco-Chr2:3228266 4.40E-275 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1939 K05387 - csv:101204862 1671.75