Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1944 ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCATCTCCGACACGGCTGAGCCCGAGAGGTATGACTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCCTTGATTTGCGTTCTCGGTCTTGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCATCTCGCCGGCGATGGGGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACCGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGAGATGAAATCCGGGTGCTGCCGCAGTGTGGCCATGGATTTCACATGTCCTGCATCGATACGTGGTTTCGATCTCACTCTTCCTGTCCTTCCTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCAGCGAGCTCGAGTTCGAACGGTGTGACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGGTTCTTACCTTAG 561 56.68 MRPFRYLAGVNSSAISDTAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGVTESRVKEEGDDKTNRFLP 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32039827 32040387 + CcPI632755_11g019440.1 Cco11g1944 193180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1944 186 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 20 167 IPR052788 -
Cco11g1944 186 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Cco11g1944 186 SUPERFAMILY RING/U-box 84 151 - -
Cco11g1944 186 MobiDBLite consensus disorder prediction 160 186 - -
Cco11g1944 186 CDD RING-H2_EL5-like 102 145 - -
Cco11g1944 186 Pfam Ring finger domain 102 145 IPR001841 -
Cco11g1944 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
Cco11g1944 186 SMART ring_2 103 144 IPR001841 -
Cco11g1944 186 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0011 Cco-Chr10:196648 Cco11g1944 Cco-Chr11:32039827 1.30E-42 dispersed
Cco10g2259 Cco-Chr10:35476551 Cco11g1944 Cco-Chr11:32039827 1.80E-22 dispersed
Cco11g1944 Cco-Chr11:32039827 Cco02g0066 Cco-Chr2:695765 7.20E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1944 - - - 0.0