Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1944 | ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCATCTCCGACACGGCTGAGCCCGAGAGGTATGACTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCCTTGATTTGCGTTCTCGGTCTTGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCATCTCGCCGGCGATGGGGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACCGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGAGATGAAATCCGGGTGCTGCCGCAGTGTGGCCATGGATTTCACATGTCCTGCATCGATACGTGGTTTCGATCTCACTCTTCCTGTCCTTCCTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCAGCGAGCTCGAGTTCGAACGGTGTGACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGGTTCTTACCTTAG | 561 | 56.68 | MRPFRYLAGVNSSAISDTAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGVTESRVKEEGDDKTNRFLP | 186 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 32039827 | 32040387 | + | CcPI632755_11g019440.1 | Cco11g1944 | 193180 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1944 | 186 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 20 | 167 | IPR052788 | - | |
Cco11g1944 | 186 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 145 | IPR001841 | - | |
Cco11g1944 | 186 | SUPERFAMILY | RING/U-box | 84 | 151 | - | - | |
Cco11g1944 | 186 | MobiDBLite | consensus disorder prediction | 160 | 186 | - | - | |
Cco11g1944 | 186 | CDD | RING-H2_EL5-like | 102 | 145 | - | - | |
Cco11g1944 | 186 | Pfam | Ring finger domain | 102 | 145 | IPR001841 | - | |
Cco11g1944 | 186 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 149 | IPR013083 | - | |
Cco11g1944 | 186 | SMART | ring_2 | 103 | 144 | IPR001841 | - | |
Cco11g1944 | 186 | MobiDBLite | consensus disorder prediction | 171 | 186 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g0011 | Cco-Chr10:196648 | Cco11g1944 | Cco-Chr11:32039827 | 1.30E-42 | dispersed | |
Cco10g2259 | Cco-Chr10:35476551 | Cco11g1944 | Cco-Chr11:32039827 | 1.80E-22 | dispersed | |
Cco11g1944 | Cco-Chr11:32039827 | Cco02g0066 | Cco-Chr2:695765 | 7.20E-25 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1944 | - | - | - | 0.0 |