Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1951 ATGGCTCTGTCTAAGTTACTATCTCTAGGCCTGTGCATTTCCCTTTTTGTCGTAGCAAGTTGTGGGAAGGACTTTTCCATTGTGGGTTACTCGCCAGAAGACTTGACTTCCATGGATAAACTAGTTGAGCTATTCGAAGAATGGATATCAAAGCATGGCAAGATTTATGAGACCATCGAAGAAAAGTGGCAAAGATTTGAGGTGTTTAAAGACAACTTGAAGCACATTGACGAAACAAACAAGAAAGTGAGTAGTTATTGGCTTGGACTTAATGAGTTTGCTGACTTGACCCACCAAGAGTTCAAAAAGATGTATCTTGGTCTAAAAGTTGAGTCGTCTCGAACAAGGCAATCCCCAGAAGAGTTCACCTATAAGGATGTCGTAGATTTGCCCAAGTCAGTAGATTGGAGAAGGAAAGGCGCTGTCACTCGTGTCAAGAACCAAGGTTCATGTGGTAGCTGCTGGGCATTTTCCACTGTTGCAGCAGTTGAGGGGATAAATAAGATTGTTAATGGAAATTTGACTTCGCTATCAGAGCAGCAACTAATTGATTGCGATAGACCTTATAACAACGGGTGCCATGGGGGCCTCATGGATTACGCATTTTCTTTTATTGTGTCTAGTGGTGGACTTCACAAGGAAGAAGACTACCCTTATCTCGAGGAGGAAAGCACTTGCGATAACAAAAAGGGGGAATTGGAGGTAGTGACAATCTCGGGCTATAAGGACGTACCGGAGAACAATGAGGCCAGCCTCATAAAGGCATTGGCACACCAGCCACTCAGCGTGGCCATAGAAGCTTCAGGAAGAGATTTCCAATTCTACAGCGGGGGCGTTTTCGATGGACCCTGTGGAACCGAGCTTGATCATGGAGTAACAGCCGTTGGATACGGATCATCAAAGGGAGTGGACTACATCATTGTGAAGAACTCTTGGGGACCCAAATGGGGAGAGAAAGGATATATAAGAATGAAGAGGAACACTGGGAAGCCTGCAGGGCTCTGTGGAATCAATAAAATGGCTTCCTATCCTACTAAAAATAAGTGA 1047 44.51 MALSKLLSLGLCISLFVVASCGKDFSIVGYSPEDLTSMDKLVELFEEWISKHGKIYETIEEKWQRFEVFKDNLKHIDETNKKVSSYWLGLNEFADLTHQEFKKMYLGLKVESSRTRQSPEEFTYKDVVDLPKSVDWRRKGAVTRVKNQGSCGSCWAFSTVAAVEGINKIVNGNLTSLSEQQLIDCDRPYNNGCHGGLMDYAFSFIVSSGGLHKEEDYPYLEEESTCDNKKGELEVVTISGYKDVPENNEASLIKALAHQPLSVAIEASGRDFQFYSGGVFDGPCGTELDHGVTAVGYGSSKGVDYIIVKNSWGPKWGEKGYIRMKRNTGKPAGLCGINKMASYPTKNK 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32067263 32068616 + CcPI632755_11g019510.1 Cco11g1951 193187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1951 348 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 305 324 IPR025661 -
Cco11g1951 348 CDD Peptidase_C1A 131 344 IPR039417 -
Cco11g1951 348 SMART Inhibitor_I29_2 45 101 IPR013201 -
Cco11g1951 348 SUPERFAMILY Cysteine proteinases 40 345 IPR038765 -
Cco11g1951 348 PRINTS Papain cysteine protease (C1) family signature 290 300 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco11g1951 348 PRINTS Papain cysteine protease (C1) family signature 305 311 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco11g1951 348 PRINTS Papain cysteine protease (C1) family signature 148 163 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco11g1951 348 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 148 159 IPR000169 -
Cco11g1951 348 SMART pept_c1 130 345 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco11g1951 348 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 40 338 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Cco11g1951 348 Pfam Papain family cysteine protease 130 345 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco11g1951 348 Gene3D Cysteine proteinases 24 347 - -
Cco11g1951 348 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Cco11g1951 348 FunFam cysteine protease XCP2 24 347 - -
Cco11g1951 348 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 288 298 IPR025660 -
Cco11g1951 348 Pfam Cathepsin propeptide inhibitor domain (I29) 45 101 IPR013201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1951 K16290 - - csv:101205826 682.945
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0996 Cco-Chr2:12457954 Cco11g1951 Cco-Chr11:32067263 6.10E-86 dispersed
Cco04g1459 Cco-Chr4:30032626 Cco11g1951 Cco-Chr11:32067263 1.10E-97 dispersed
Cco05g2282 Cco-Chr5:31521545 Cco11g1951 Cco-Chr11:32067263 9.90E-100 dispersed
Cco08g1645 Cco-Chr8:27939533 Cco11g1951 Cco-Chr11:32067263 6.40E-49 dispersed
Cco08g1652 Cco-Chr8:27998364 Cco11g1951 Cco-Chr11:32067263 4.60E-92 dispersed
Cco11g0417 Cco-Chr11:4300049 Cco11g1951 Cco-Chr11:32067263 5.20E-54 dispersed
Cco11g1188 Cco-Chr11:23292384 Cco11g1951 Cco-Chr11:32067263 9.40E-74 dispersed
Cco11g1189 Cco-Chr11:23296572 Cco11g1951 Cco-Chr11:32067263 5.40E-39 dispersed
Cco11g1951 Cco-Chr11:32067263 Cco02g0346 Cco-Chr2:3167797 2.90E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g53 . . . . . . . . . . . . Car01g01605 . . . . . . . . . . . . . . . . . . Cone4ag2036 . . . Lsi04g01835 Csa04g02733 . . . . . . . . . . . Cmo01g02094 . . . . . . Cpe02g00017 Bhi09g02835 Tan01g5151 Cmetu07g1435 . Hepe01g2364 Mch11g0035 . Cla11g01846 Cam11g1913 Cec11g1938 Cco11g1951 Clacu11g2077 Cmu11g1882 Cre11g2290 . . . Cme07g00030