Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1953 ATGGGGCTCAAAGTGCTTTCCGCTCTCGACACTGCCAAAACCCAATTGTACCATTTCAAGGCCATCGTCATCGCCGGGATGGGCCTCTTCACCGACGCCTACGATCTCTTCAGTATCACTCCCATTATGACTCTCCTCGGACGTGTCTATTACCCTGACCAACACTACGAGATTCCGGCCGCCGTCAAATCCGCTATGCTCGCGGTGGCTCTTCTGGGGACGGCGATGGGTCAACTGGTGTTTGGCATACTCGGAGACAGAGTGGGAAGGCGGCGCGTGTACGGACTCGCATTGGCGCTGATGGTGGTGAGTTCCATCGACTGTGGATTCTCAATCTGCACCACCAGGAGCTGTGTCCTTGTGAGCCTAGGGTTTTTCAGGTTCCTTCTGGGGCTGGGAATTGGGGGAGATTACCCATTGTCGGCGACCATAATGTCGGAGTTCGCTAACAAGAAGACACGTGGAGCGTTCATAGCGGCGGTGTTCTCGATGCAGGGATTCGGGATCTTGGCCAGCGCCACCGTCACCATGATCGTCTGCTCCATATTCGATCGGGCCTCTAACTACCCAACCAGTGATCGTACTCCGATGGGGGCCGATATTGCTTGGAGGCTGATTCTCATGCTCGGCGCTGTGCCGGCGGCGATGACTTATTACTGGCGAATGATGATGCCGGAAACTGCCAGATACACGGCTCTGGTTGAGAGGAATGTGGAACAAGCGGCAAAGGATATGGAAAAAGTGTTGGATGTGTCGTTGGTTGATATCACGGAAGACAGCCCTGTGCCCCCTTCTCCCCCAAATTTCTCCTTCTTTTCCAACCAATTTCTTCGCCGCCATGGCCGCGATCTCCTTTCCTGTGCCGCCTCCTGGTTCCTCGTCGACATCGTCTTCTACAGCAGCAACCTCTTCCAATCCAAAATCTACACCCAATTCCTTCCTTCCAACCAAAAATCCATCAACGTCTACCATCAAGCCTTCAACGAAGCCAGACTCCAAGCCATCGTCGCCGTCTGTTCCACCATTCCTGGCTACTGGATCTCCGTCTTTTTCATCGACCGTCTCGGCCGAGTCACCATCCAAATCGTCGGATTTCTCTTCATGGCCCTCGGCTATCTCCTCATCGCCATCCCCTACAACTCTTTCTGGGTCTCCGATAAACACAAATACGGTTTCATGCTATTCTACTGCCTCACATTCTTCTTCTCAAATTTCGGCCCCAACACCACCACTTTCATTCTCCCCGCCGAGCTCTTTCCCGCTAGGTTCCGTTCCACCTGCCATGGAATCTCCGGCGCCGCCGGCAAAATCGGGGCCATCATCGGAGCCGTGGGCTTCCTGTGGGCCTCGCACGACCGGAAGGACGGGGGAATTGGGATGAAGGCATCGTTGATGTTGCTTGGTGGGGTGAGTCTTGCGGGAGTGGCTGTCACGTATTTCTTCACCAGAGAAACCAATGGAAGGTCGTTGGAAGAGAATGAGAAGGAAGATGAATACGCCGGGATTTTGTTTCTCAGGTGCTTTCACTTTCACCCTCACCCTCACCCTCACCACGCTACTGCTACTCCTACTGCTACTGCCTACTCCCGCCCGTCTGTTGCTCAACACGACGACATGTCGTCACGTTCTACCTCCAACTCCATTCCAACTACTACCACACCAATTCATTATTAG 1674 53.88 MGLKVLSALDTAKTQLYHFKAIVIAGMGLFTDAYDLFSITPIMTLLGRVYYPDQHYEIPAAVKSAMLAVALLGTAMGQLVFGILGDRVGRRRVYGLALALMVVSSIDCGFSICTTRSCVLVSLGFFRFLLGLGIGGDYPLSATIMSEFANKKTRGAFIAAVFSMQGFGILASATVTMIVCSIFDRASNYPTSDRTPMGADIAWRLILMLGAVPAAMTYYWRMMMPETARYTALVERNVEQAAKDMEKVLDVSLVDITEDSPVPPSPPNFSFFSNQFLRRHGRDLLSCAASWFLVDIVFYSSNLFQSKIYTQFLPSNQKSINVYHQAFNEARLQAIVAVCSTIPGYWISVFFIDRLGRVTIQIVGFLFMALGYLLIAIPYNSFWVSDKHKYGFMLFYCLTFFFSNFGPNTTTFILPAELFPARFRSTCHGISGAAGKIGAIIGAVGFLWASHDRKDGGIGMKASLMLLGGVSLAGVAVTYFFTRETNGRSLEENEKEDEYAGILFLRCFHFHPHPHPHHATATPTATAYSRPSVAQHDDMSSRSTSNSIPTTTTPIHY 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32071316 32073954 - CcPI632755_11g019530.1 Cco11g1953 193189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1953 557 SUPERFAMILY MFS general substrate transporter 9 497 IPR036259 -
Cco11g1953 557 CDD MFS_PhT 22 485 - -
Cco11g1953 557 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 6 493 - -
Cco11g1953 557 ProSitePatterns Sugar transport proteins signature 2. 129 154 IPR005829 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cco11g1953 557 Gene3D MFS general substrate transporter like domains 17 502 IPR036259 -
Cco11g1953 557 ProSiteProfiles Major facilitator superfamily (MFS) profile. 21 486 IPR020846 GO:0022857(InterPro)
Cco11g1953 557 Pfam Sugar (and other) transporter 23 494 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cco11g1953 557 MobiDBLite consensus disorder prediction 531 557 - -
Cco11g1953 557 FunFam Inorganic phosphate transporter 1-6 17 501 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0119 Cco-Chr7:1283427 Cco11g1953 Cco-Chr11:32071316 6.50E-143 dispersed
Cco08g0683 Cco-Chr8:18150366 Cco11g1953 Cco-Chr11:32071316 7.20E-28 dispersed
Cco08g0684 Cco-Chr8:18155001 Cco11g1953 Cco-Chr11:32071316 2.40E-31 dispersed
Cco08g0685 Cco-Chr8:18155511 Cco11g1953 Cco-Chr11:32071316 1.70E-56 dispersed
Cco11g1953 Cco-Chr11:32071316 Cco07g0102 Cco-Chr7:1049884 8.20E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1953 K08176 - csv:101218554 919.072