Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1953 | ATGGGGCTCAAAGTGCTTTCCGCTCTCGACACTGCCAAAACCCAATTGTACCATTTCAAGGCCATCGTCATCGCCGGGATGGGCCTCTTCACCGACGCCTACGATCTCTTCAGTATCACTCCCATTATGACTCTCCTCGGACGTGTCTATTACCCTGACCAACACTACGAGATTCCGGCCGCCGTCAAATCCGCTATGCTCGCGGTGGCTCTTCTGGGGACGGCGATGGGTCAACTGGTGTTTGGCATACTCGGAGACAGAGTGGGAAGGCGGCGCGTGTACGGACTCGCATTGGCGCTGATGGTGGTGAGTTCCATCGACTGTGGATTCTCAATCTGCACCACCAGGAGCTGTGTCCTTGTGAGCCTAGGGTTTTTCAGGTTCCTTCTGGGGCTGGGAATTGGGGGAGATTACCCATTGTCGGCGACCATAATGTCGGAGTTCGCTAACAAGAAGACACGTGGAGCGTTCATAGCGGCGGTGTTCTCGATGCAGGGATTCGGGATCTTGGCCAGCGCCACCGTCACCATGATCGTCTGCTCCATATTCGATCGGGCCTCTAACTACCCAACCAGTGATCGTACTCCGATGGGGGCCGATATTGCTTGGAGGCTGATTCTCATGCTCGGCGCTGTGCCGGCGGCGATGACTTATTACTGGCGAATGATGATGCCGGAAACTGCCAGATACACGGCTCTGGTTGAGAGGAATGTGGAACAAGCGGCAAAGGATATGGAAAAAGTGTTGGATGTGTCGTTGGTTGATATCACGGAAGACAGCCCTGTGCCCCCTTCTCCCCCAAATTTCTCCTTCTTTTCCAACCAATTTCTTCGCCGCCATGGCCGCGATCTCCTTTCCTGTGCCGCCTCCTGGTTCCTCGTCGACATCGTCTTCTACAGCAGCAACCTCTTCCAATCCAAAATCTACACCCAATTCCTTCCTTCCAACCAAAAATCCATCAACGTCTACCATCAAGCCTTCAACGAAGCCAGACTCCAAGCCATCGTCGCCGTCTGTTCCACCATTCCTGGCTACTGGATCTCCGTCTTTTTCATCGACCGTCTCGGCCGAGTCACCATCCAAATCGTCGGATTTCTCTTCATGGCCCTCGGCTATCTCCTCATCGCCATCCCCTACAACTCTTTCTGGGTCTCCGATAAACACAAATACGGTTTCATGCTATTCTACTGCCTCACATTCTTCTTCTCAAATTTCGGCCCCAACACCACCACTTTCATTCTCCCCGCCGAGCTCTTTCCCGCTAGGTTCCGTTCCACCTGCCATGGAATCTCCGGCGCCGCCGGCAAAATCGGGGCCATCATCGGAGCCGTGGGCTTCCTGTGGGCCTCGCACGACCGGAAGGACGGGGGAATTGGGATGAAGGCATCGTTGATGTTGCTTGGTGGGGTGAGTCTTGCGGGAGTGGCTGTCACGTATTTCTTCACCAGAGAAACCAATGGAAGGTCGTTGGAAGAGAATGAGAAGGAAGATGAATACGCCGGGATTTTGTTTCTCAGGTGCTTTCACTTTCACCCTCACCCTCACCCTCACCACGCTACTGCTACTCCTACTGCTACTGCCTACTCCCGCCCGTCTGTTGCTCAACACGACGACATGTCGTCACGTTCTACCTCCAACTCCATTCCAACTACTACCACACCAATTCATTATTAG | 1674 | 53.88 | MGLKVLSALDTAKTQLYHFKAIVIAGMGLFTDAYDLFSITPIMTLLGRVYYPDQHYEIPAAVKSAMLAVALLGTAMGQLVFGILGDRVGRRRVYGLALALMVVSSIDCGFSICTTRSCVLVSLGFFRFLLGLGIGGDYPLSATIMSEFANKKTRGAFIAAVFSMQGFGILASATVTMIVCSIFDRASNYPTSDRTPMGADIAWRLILMLGAVPAAMTYYWRMMMPETARYTALVERNVEQAAKDMEKVLDVSLVDITEDSPVPPSPPNFSFFSNQFLRRHGRDLLSCAASWFLVDIVFYSSNLFQSKIYTQFLPSNQKSINVYHQAFNEARLQAIVAVCSTIPGYWISVFFIDRLGRVTIQIVGFLFMALGYLLIAIPYNSFWVSDKHKYGFMLFYCLTFFFSNFGPNTTTFILPAELFPARFRSTCHGISGAAGKIGAIIGAVGFLWASHDRKDGGIGMKASLMLLGGVSLAGVAVTYFFTRETNGRSLEENEKEDEYAGILFLRCFHFHPHPHPHHATATPTATAYSRPSVAQHDDMSSRSTSNSIPTTTTPIHY | 557 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 32071316 | 32073954 | - | CcPI632755_11g019530.1 | Cco11g1953 | 193189 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1953 | 557 | SUPERFAMILY | MFS general substrate transporter | 9 | 497 | IPR036259 | - | |
Cco11g1953 | 557 | CDD | MFS_PhT | 22 | 485 | - | - | |
Cco11g1953 | 557 | PANTHER | SOLUTE CARRIER FAMILY 22 MEMBER | 6 | 493 | - | - | |
Cco11g1953 | 557 | ProSitePatterns | Sugar transport proteins signature 2. | 129 | 154 | IPR005829 | GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro) | |
Cco11g1953 | 557 | Gene3D | MFS general substrate transporter like domains | 17 | 502 | IPR036259 | - | |
Cco11g1953 | 557 | ProSiteProfiles | Major facilitator superfamily (MFS) profile. | 21 | 486 | IPR020846 | GO:0022857(InterPro) | |
Cco11g1953 | 557 | Pfam | Sugar (and other) transporter | 23 | 494 | IPR005828 | GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro) | |
Cco11g1953 | 557 | MobiDBLite | consensus disorder prediction | 531 | 557 | - | - | |
Cco11g1953 | 557 | FunFam | Inorganic phosphate transporter 1-6 | 17 | 501 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g0119 | Cco-Chr7:1283427 | Cco11g1953 | Cco-Chr11:32071316 | 6.50E-143 | dispersed | |
Cco08g0683 | Cco-Chr8:18150366 | Cco11g1953 | Cco-Chr11:32071316 | 7.20E-28 | dispersed | |
Cco08g0684 | Cco-Chr8:18155001 | Cco11g1953 | Cco-Chr11:32071316 | 2.40E-31 | dispersed | |
Cco08g0685 | Cco-Chr8:18155511 | Cco11g1953 | Cco-Chr11:32071316 | 1.70E-56 | dispersed | |
Cco11g1953 | Cco-Chr11:32071316 | Cco07g0102 | Cco-Chr7:1049884 | 8.20E-141 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1953 | K08176 | - | csv:101218554 | 919.072 |