Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1956 ATGTCGGGATCTGAGACCGGAGTGATTTCCAGCGGCGAACCCTTCACCATCGGTCTCCACAAGAATTCAGTACAGTCACAACAGCCGGTCATGCAGGGCATGCATTTACCCTTCGGCGCCGATGGCGTCTACAAGCCCGTTGCCGCCGCCTCTCCCACCTACCAGTCCTCCGGCGTCGGAGTTGCCGGTAATGCTGGTGCCGATGGATCTGCTCGTGAAGCTTTCGTTAACATGAATTCGCAAAGCGAGCCTCTAAAGAGGAAGAGAGGGAGGCCTCGGAAGTATGGGCCAGATGGCAGTATTGCAATGGCTCCTGCAGTCCGCTCTCCCGCCGCAACTCAGTCCAGTGGAGGTTTTTCTCCTCCACCCACCGCCGCGCCTCCGTCGGGAGGATCAGCCACTCAAACTTCTTTGAAGAAAGCCAGAGGCAGACCCCCTGGCTCTTCTAGCAAAAAGCAGCAGTTGGATGGCTCGGGGTCAGCAGGAGTTGGATTTACCCCACATGTCATCACCGTAAAAGCTGGAGAGGATGTATCTTCGAAAATAATGTCATTTTCACAGAATGGTCCTAGAGCTGTTTGTATCCTTACAGCAAATGGAGCAATATCCAATGTGACTCTACGTCAACCAGCCATGTCTGGTGGAACCGTGACTTACGAGGGGCGATTCGAGATTTTGTCGCTATCTGGGTCCTATCTCCTCTCTGAGAATGGCAGCCAGCGGAGTCGAACTGGAGGTCTAAGTGTTTCATTATCTGGACCAGATGGTAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCATCTCCTGTACAGGTGGTCGTGGGGAGCTTCGTCACTGATGGGGTGCACAAGGTATTGAGACAAGTAAACCAAATAGAACAGTCCCCTGTTACTGCACCCCATAAACTTGCTCCGATCCGTGCTGGAATGACGGGAGCCAGCAGCCCGCCATCACGTGGGACTCTCAGCGAATCCTCAGGAGGGCCCGGGAGTCCGTTTAATCAGAGTGCTATAGCCTGCAATAATAACACCATATCTTGGAAGTGA 1056 53.6 MSGSETGVISSGEPFTIGLHKNSVQSQQPVMQGMHLPFGADGVYKPVAAASPTYQSSGVGVAGNAGADGSAREAFVNMNSQSEPLKRKRGRPRKYGPDGSIAMAPAVRSPAATQSSGGFSPPPTAAPPSGGSATQTSLKKARGRPPGSSSKKQQLDGSGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGSQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGVHKVLRQVNQIEQSPVTAPHKLAPIRAGMTGASSPPSRGTLSESSGGPGSPFNQSAIACNNNTISWK 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32080088 32082716 - CcPI632755_11g019560.1 Cco11g1956 193192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1956 351 FunFam AT-hook motif nuclear-localized protein 1-like 167 298 - -
Cco11g1956 351 ProSiteProfiles PPC domain profile profile. 161 302 IPR005175 -
Cco11g1956 351 Gene3D - 167 298 - -
Cco11g1956 351 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 281 IPR005175 -
Cco11g1956 351 CDD DUF296 166 280 IPR005175 -
Cco11g1956 351 MobiDBLite consensus disorder prediction 300 351 - -
Cco11g1956 351 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 288 - -
Cco11g1956 351 MobiDBLite consensus disorder prediction 77 165 - -
Cco11g1956 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 334 IPR039605 GO:0003680(InterPro)
Cco11g1956 351 SMART AT_hook_2 139 151 IPR017956 GO:0003677(InterPro)
Cco11g1956 351 SMART AT_hook_2 86 98 IPR017956 GO:0003677(InterPro)
Cco11g1956 351 MobiDBLite consensus disorder prediction 317 351 - -
Cco11g1956 351 MobiDBLite consensus disorder prediction 129 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1074 Cco-Chr8:22542348 Cco11g1956 Cco-Chr11:32080088 4.00E-90 dispersed
Cco10g0178 Cco-Chr10:1723080 Cco11g1956 Cco-Chr11:32080088 1.30E-46 dispersed
Cco11g0056 Cco-Chr11:602073 Cco11g1956 Cco-Chr11:32080088 6.20E-48 dispersed
Cco11g1956 Cco-Chr11:32080088 Cco06g0387 Cco-Chr6:4285278 3.40E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1956 - - - 0.0