Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1957 ATGGAGAAGGGGCCGACCACTGTTTCAGCAATGGAAGCGTTCGAGAAGCTGGAGAAGGTTGGAGAAGGAACTTACGGCAAAGTTTATAGGGCAAGGGAGAAGGCGACCGGCAAGATTGTGGCTCTCAAGAAGACGCGCCTCCATGAGGATGAGGAAGGTGTTCCTCCCACCACTCTCAGAGAGGTTTCAATTCTTCGAATGCTTTCTCGGGATCCCCATATTGTTAGGTTGATGGATGTCAAACAAGGCCAGAACAAGGAAGGGAAAACCGTCCTTTACTTGGTGTTTGAATACATGGATACTGATCTGAAGAAATTCATCAAGAGTTTCCGTCAAACGGGAGAAAACATTCCCGTTAACACTGTCAAGAGTTTGATGTACCAACTCTGTAAGGGCGTTGCCTTCTGCCATGGTCATGGAATCCTGCACAGGGACCTGAAACCACACAATCTCTTGATGGACCGAAAGACAATGATGCTCAAAATTGCAGACCTTGGGTTGGCTCGAGCATTTACTGTGCCAATTAAGAAGTATACTCATGAGATACTGACACTCTGGTATAGAGCTCCCGAAGTTTTGTTGGGGGCAACTCATTACTCCACAGCTGTAGATATGTGGTCTGTTGCCTGCATATTCGCCGAACTTGCCACCAAGCAGGCTCTCTTTCCTGGAGACTCTGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGAACCCCAAATGAAAAGATCTGGCCTGGTGTGAGCAAACTAATGAACTGGCATGAATATCCCCAGTGGAGCCCCCAAAGCCTTTCAACTGCTGTCCCCAACTTGGATGATAAAGGGCTAGATCTGCTTTCACAAATGTTGAGGTATGAACCTTCAACGCGTATTTCAGCAAAGAAAGCAATGGAACATCCTTATTTTGATGACTTGAACAAGGAATATCTCTGA 939 46.43 MEKGPTTVSAMEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIKSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVACIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKIWPGVSKLMNWHEYPQWSPQSLSTAVPNLDDKGLDLLSQMLRYEPSTRISAKKAMEHPYFDDLNKEYL 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32088666 32090551 + CcPI632755_11g019570.1 Cco11g1957 193193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1957 312 SMART serkin_6 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1957 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1957 312 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524(InterPro)
Cco11g1957 312 FunFam Cyclin-dependent kinase 2 102 311 - -
Cco11g1957 312 Pfam Protein kinase domain 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1957 312 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Cco11g1957 312 PANTHER CELL DIVISION PROTEIN KINASE 14 304 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Cco11g1957 312 SUPERFAMILY Protein kinase-like (PK-like) 9 308 IPR011009 -
Cco11g1957 312 ProSiteProfiles Protein kinase domain profile. 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1957 312 Gene3D Transferase(Phosphotransferase) domain 1 102 311 - -
Cco11g1957 312 FunFam Cyclin-dependent kinase B2,2 10 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0781 Cco-Chr4:23007610 Cco11g1957 Cco-Chr11:32088666 3.00E-121 dispersed
Cco05g2431 Cco-Chr5:32817538 Cco11g1957 Cco-Chr11:32088666 8.00E-95 dispersed
Cco07g0778 Cco-Chr7:16635618 Cco11g1957 Cco-Chr11:32088666 4.30E-63 dispersed
Cco08g1822 Cco-Chr8:29256625 Cco11g1957 Cco-Chr11:32088666 2.80E-35 dispersed
Cco10g0115 Cco-Chr10:1042883 Cco11g1957 Cco-Chr11:32088666 1.80E-51 dispersed
Cco10g1392 Cco-Chr10:26983837 Cco11g1957 Cco-Chr11:32088666 1.20E-43 dispersed
Cco11g1957 Cco-Chr11:32088666 Cco03g1703 Cco-Chr3:31767472 1.50E-46 dispersed
Cco11g1957 Cco-Chr11:32088666 Cco11g1440 Cco-Chr11:27176003 1.80E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87269 PF00069 Pkinase 7.50E-71 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1957 K07760 - csv:101208001 624.78