Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1957 ATGGAGAAGGGGCCGACCACTGTTTCAGCAATGGAAGCGTTCGAGAAGCTGGAGAAGGTTGGAGAAGGAACTTACGGCAAAGTTTATAGGGCAAGGGAGAAGGCGACCGGCAAGATTGTGGCTCTCAAGAAGACGCGCCTCCATGAGGATGAGGAAGGTGTTCCTCCCACCACTCTCAGAGAGGTTTCAATTCTTCGAATGCTTTCTCGGGATCCCCATATTGTTAGGTTGATGGATGTCAAACAAGGCCAGAACAAGGAAGGGAAAACCGTCCTTTACTTGGTGTTTGAATACATGGATACTGATCTGAAGAAATTCATCAAGAGTTTCCGTCAAACGGGAGAAAACATTCCCGTTAACACTGTCAAGAGTTTGATGTACCAACTCTGTAAGGGCGTTGCCTTCTGCCATGGTCATGGAATCCTGCACAGGGACCTGAAACCACACAATCTCTTGATGGACCGAAAGACAATGATGCTCAAAATTGCAGACCTTGGGTTGGCTCGAGCATTTACTGTGCCAATTAAGAAGTATACTCATGAGATACTGACACTCTGGTATAGAGCTCCCGAAGTTTTGTTGGGGGCAACTCATTACTCCACAGCTGTAGATATGTGGTCTGTTGCCTGCATATTCGCCGAACTTGCCACCAAGCAGGCTCTCTTTCCTGGAGACTCTGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGAACCCCAAATGAAAAGATCTGGCCTGGTGTGAGCAAACTAATGAACTGGCATGAATATCCCCAGTGGAGCCCCCAAAGCCTTTCAACTGCTGTCCCCAACTTGGATGATAAAGGGCTAGATCTGCTTTCACAAATGTTGAGGTATGAACCTTCAACGCGTATTTCAGCAAAGAAAGCAATGGAACATCCTTATTTTGATGACTTGAACAAGGAATATCTCTGA 939 46.43 MEKGPTTVSAMEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIKSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVACIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKIWPGVSKLMNWHEYPQWSPQSLSTAVPNLDDKGLDLLSQMLRYEPSTRISAKKAMEHPYFDDLNKEYL 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32088666 32090551 + CcPI632755_11g019570.1 Cco11g1957 193193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1957 312 SMART serkin_6 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1957 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1957 312 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524(InterPro)
Cco11g1957 312 FunFam Cyclin-dependent kinase 2 102 311 - -
Cco11g1957 312 Pfam Protein kinase domain 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1957 312 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Cco11g1957 312 PANTHER CELL DIVISION PROTEIN KINASE 14 304 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Cco11g1957 312 SUPERFAMILY Protein kinase-like (PK-like) 9 308 IPR011009 -
Cco11g1957 312 ProSiteProfiles Protein kinase domain profile. 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1957 312 Gene3D Transferase(Phosphotransferase) domain 1 102 311 - -
Cco11g1957 312 FunFam Cyclin-dependent kinase B2,2 10 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1957 K07760 - - csv:101208001 624.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0781 Cco-Chr4:23007610 Cco11g1957 Cco-Chr11:32088666 3.00E-121 dispersed
Cco05g2431 Cco-Chr5:32817538 Cco11g1957 Cco-Chr11:32088666 8.00E-95 dispersed
Cco07g0778 Cco-Chr7:16635618 Cco11g1957 Cco-Chr11:32088666 4.30E-63 dispersed
Cco08g1822 Cco-Chr8:29256625 Cco11g1957 Cco-Chr11:32088666 2.80E-35 dispersed
Cco10g0115 Cco-Chr10:1042883 Cco11g1957 Cco-Chr11:32088666 1.80E-51 dispersed
Cco10g1392 Cco-Chr10:26983837 Cco11g1957 Cco-Chr11:32088666 1.20E-43 dispersed
Cco11g1957 Cco-Chr11:32088666 Cco03g1703 Cco-Chr3:31767472 1.50E-46 dispersed
Cco11g1957 Cco-Chr11:32088666 Cco11g1440 Cco-Chr11:27176003 1.80E-73 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g2431 . 1 294 Core Cell Cycle Gene Families AT3G48750 85.4 4.6e-151 530.8
Cco04g0781 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 9.5e-96 347.1
Cco11g1957 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.4e-93 338.6
Cco04g0781 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 4.7e-154 540.8
Cco11g1957 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 9.3e-118 420.2
Cco05g2431 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 2.3e-92 335.9
Cco07g0778 . 1 142 Core Cell Cycle Gene Families AT3G54180 54.2 5.0e-39 158.7
Cco04g0781 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 2.7e-123 438.3
Cco11g1957 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 2.9e-93 338.6
Cco11g1957 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.3e-156 548.5
Cco04g0781 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 9.4e-118 420.2
Cco05g2431 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.4 2.1e-93 339.3
Cco07g0778 . 1 142 Core Cell Cycle Gene Families AT1G76540 70.7 3.5e-56 215.7
Cco11g1957 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.5e-160 560.8
Cco04g0781 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.5e-120 428.3
Cco05g2431 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.4 1.2e-96 350.1
Cco07g0778 . 1 142 Core Cell Cycle Gene Families AT1G20930 71.3 7.1e-57 218.0
Cco02g2568 . 49 563 Core Cell Cycle Gene Families AT5G10270 75.3 8.9e-219 756.5
Cco10g1398 . 24 485 Core Cell Cycle Gene Families AT5G10270 77.5 1.2e-210 729.6
Cco05g1100 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.3e-97 353.2
Cco05g0679 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 3.9e-97 352.4
Cco08g0124 . 137 453 Core Cell Cycle Gene Families AT5G10270 53.0 8.6e-97 351.3
Cco03g0396 . 93 409 Core Cell Cycle Gene Families AT5G10270 52.9 3.3e-96 349.4
Cco11g0075 . 150 466 Core Cell Cycle Gene Families AT5G10270 52.1 4.3e-96 349.0
Cco02g1754 . 101 419 Core Cell Cycle Gene Families AT5G10270 51.0 5.2e-94 342.0
Cco02g1891 . 193 509 Core Cell Cycle Gene Families AT5G10270 52.3 6.9e-94 341.7
Cco01g1793 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.1 1.4e-91 334.0
Cco03g1703 . 840 1130 Core Cell Cycle Gene Families AT5G10270 52.8 4.6e-90 328.9
Cco02g2568 . 113 562 Core Cell Cycle Gene Families AT5G64960 72.9 8.2e-179 623.6
Cco10g1398 . 88 538 Core Cell Cycle Gene Families AT5G64960 71.7 6.1e-174 607.4
Cco05g1100 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.1e-81 300.1
Cco11g0075 . 204 466 Core Cell Cycle Gene Families AT5G64960 52.9 1.0e-80 297.7
Cco03g0396 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.5 1.4e-80 297.4
Cco02g1891 . 247 509 Core Cell Cycle Gene Families AT5G64960 53.2 2.3e-80 296.6
Cco05g0679 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 3.9e-80 295.8
Cco08g0124 . 191 453 Core Cell Cycle Gene Families AT5G64960 53.2 5.1e-80 295.4
Cco02g1890 . 182 444 Core Cell Cycle Gene Families AT5G64960 52.5 4.3e-79 292.4
Cco03g1703 . 894 1130 Core Cell Cycle Gene Families AT5G64960 52.0 1.4e-72 270.8
Cco06g1643 . 4 414 Core Cell Cycle Gene Families AT1G73690 74.0 4.9e-172 600.9
Cco06g1643 . 12 342 Core Cell Cycle Gene Families AT1G66750 77.7 2.2e-155 545.4
Cco06g1643 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.5 5.2e-174 607.4
Cco04g0188 . 32 484 Core Cell Cycle Gene Families AT5G63610 78.3 8.3e-203 703.4
Cco11g0257 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.6 1.3e-174 609.8
Cco08g0731 . 5 498 Core Cell Cycle Gene Families AT1G44110 56.6 1.7e-144 509.6
Cco09g0233 . 225 488 Core Cell Cycle Gene Families AT1G44110 56.8 1.6e-86 317.0
Cco05g1952 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.8 1.2e-84 310.8
Cco05g2298 . 322 601 Core Cell Cycle Gene Families AT1G44110 52.5 1.4e-82 303.9
Cco08g1812 . 85 373 Core Cell Cycle Gene Families AT1G44110 50.2 1.7e-78 290.4
Cco08g1451 . 321 582 Core Cell Cycle Gene Families AT1G44110 53.1 1.1e-74 277.7
Cco09g0233 . 224 488 Core Cell Cycle Gene Families AT1G77390 52.5 5.6e-76 282.0
Cco05g1952 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.8 2.1e-75 280.0
Cco05g2298 . 327 599 Core Cell Cycle Gene Families AT1G77390 50.5 2.0e-73 273.5
Cco08g1451 . 321 578 Core Cell Cycle Gene Families AT1G77390 50.4 4.8e-67 252.3
Cco05g1952 . 16 484 Core Cell Cycle Gene Families AT5G25380 53.0 6.0e-118 421.4
Cco08g1451 . 200 594 Core Cell Cycle Gene Families AT5G25380 54.3 1.3e-101 367.1
Cco09g0233 . 223 490 Core Cell Cycle Gene Families AT5G25380 63.1 4.6e-94 342.0
Cco08g0731 . 216 491 Core Cell Cycle Gene Families AT5G25380 55.4 1.5e-81 300.4
Cco05g2298 . 326 594 Core Cell Cycle Gene Families AT5G25380 51.7 6.3e-75 278.5
Cco02g0726 . 119 344 Core Cell Cycle Gene Families AT5G25380 51.5 4.1e-58 222.6
Cco05g1952 . 44 422 Core Cell Cycle Gene Families AT5G11300 53.0 4.3e-94 342.0
Cco08g1451 . 317 532 Core Cell Cycle Gene Families AT5G11300 69.9 2.5e-78 289.7
Cco08g0731 . 207 436 Core Cell Cycle Gene Families AT5G11300 55.7 1.8e-68 256.9
Cco05g2298 . 322 538 Core Cell Cycle Gene Families AT5G11300 55.3 7.4e-62 235.0
Cco08g1812 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.1e-60 229.6
Cco02g0726 . 119 286 Core Cell Cycle Gene Families AT5G11300 51.5 1.4e-41 167.5
Cco09g0233 . 189 490 Core Cell Cycle Gene Families AT1G15570 64.2 2.5e-111 399.4
Cco08g0731 . 188 495 Core Cell Cycle Gene Families AT1G15570 52.1 3.5e-81 299.3
Cco02g0726 . 119 348 Core Cell Cycle Gene Families AT1G15570 50.6 2.1e-57 220.3
Cco09g0233 . 4 495 Core Cell Cycle Gene Families AT1G80370 51.3 2.4e-114 409.5
Cco08g0731 . 217 483 Core Cell Cycle Gene Families AT1G80370 57.3 4.7e-81 298.9
Cco05g2298 . 322 599 Core Cell Cycle Gene Families AT1G80370 51.1 1.2e-76 284.3
Cco08g1812 . 92 370 Core Cell Cycle Gene Families AT1G80370 52.0 2.2e-75 280.0
Cco02g0726 . 119 349 Core Cell Cycle Gene Families AT1G80370 51.3 1.8e-56 217.2
Cco08g1812 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.5 6.4e-115 411.0
Cco05g2298 . 228 602 Core Cell Cycle Gene Families AT5G43080 57.3 1.0e-112 403.7
Cco05g1952 . 208 477 Core Cell Cycle Gene Families AT5G43080 54.1 4.3e-79 292.0
Cco08g0731 . 218 492 Core Cell Cycle Gene Families AT5G43080 52.0 1.6e-78 290.0
Cco09g0233 . 226 488 Core Cell Cycle Gene Families AT5G43080 51.0 6.7e-72 268.1
Cco08g1812 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.4 6.1e-124 441.0
Cco05g2298 . 228 602 Core Cell Cycle Gene Families AT1G47210 54.5 2.8e-113 405.6
Cco05g1952 . 208 477 Core Cell Cycle Gene Families AT1G47210 52.2 1.6e-76 283.5
Cco09g0233 . 226 486 Core Cell Cycle Gene Families AT1G47210 51.7 1.3e-73 273.9
Cco05g2298 . 322 603 Core Cell Cycle Gene Families AT1G47220 59.2 6.9e-95 344.4
Cco08g1812 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 6.4e-93 337.8
Cco05g1952 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.7 8.2e-72 267.7
Cco05g2298 . 228 602 Core Cell Cycle Gene Families AT1G47230 57.2 4.7e-116 414.8
Cco08g1812 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.4 6.7e-115 411.0
Cco02g0726 . 66 352 Core Cell Cycle Gene Families AT1G47230 53.6 7.3e-77 284.6
Cco08g0731 . 219 500 Core Cell Cycle Gene Families AT1G47230 50.5 2.1e-76 283.1
Cco05g1952 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.0 3.2e-72 269.2
Cco09g0233 . 228 488 Core Cell Cycle Gene Families AT1G47230 51.9 1.0e-70 264.2
Cco04g0704 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 9.2e-116 414.1
Cco04g0704 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.6 6.8e-82 301.2
Cco02g2416 . 102 304 Core Cell Cycle Gene Families AT5G06150 63.2 4.9e-64 241.9
Cco04g1862 . 170 344 Core Cell Cycle Gene Families AT5G06150 54.3 6.0e-46 181.8
Cco04g0704 . 6 406 Core Cell Cycle Gene Families AT3G11520 57.6 3.9e-105 378.6
Cco04g1862 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.4 1.5e-61 233.8
Cco02g2416 . 14 411 Core Cell Cycle Gene Families AT2G26760 52.5 8.3e-108 387.5
Cco04g1862 . 8 425 Core Cell Cycle Gene Families AT2G17620 59.3 1.8e-119 426.4
Cco11g1919 . 208 607 Core Cell Cycle Gene Families AT2G17620 52.5 5.1e-106 381.7
Cco04g1866 . 1 131 Core Cell Cycle Gene Families AT2G17620 65.0 1.2e-41 167.9
Cco04g1862 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.7 4.7e-103 371.7
Cco11g1919 . 201 564 Core Cell Cycle Gene Families AT4G35620 53.4 5.9e-90 328.2
Cco02g2416 . 137 363 Core Cell Cycle Gene Families AT4G35620 50.9 2.3e-54 209.9
Cco04g1866 . 6 131 Core Cell Cycle Gene Families AT4G35620 64.5 2.5e-40 163.3
Cco11g1919 . 172 607 Core Cell Cycle Gene Families AT1G20610 63.1 5.7e-142 501.1
Cco04g1862 . 1 425 Core Cell Cycle Gene Families AT1G20610 56.7 5.4e-116 414.8
Cco04g1866 . 1 131 Core Cell Cycle Gene Families AT1G20610 64.3 3.0e-42 169.9
Cco11g1919 . 175 504 Core Cell Cycle Gene Families AT1G76310 63.5 5.4e-103 371.3
Cco04g1862 . 1 340 Core Cell Cycle Gene Families AT1G76310 53.2 3.1e-82 302.4
Cco02g2416 . 133 300 Core Cell Cycle Gene Families AT1G76310 52.4 5.9e-41 165.2
Cco04g1866 . 5 131 Core Cell Cycle Gene Families AT1G76310 65.0 1.5e-39 160.6
Cco09g2265 . 12 329 Core Cell Cycle Gene Families AT1G70210 65.6 3.2e-111 398.7
Cco05g2768 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.3 4.4e-105 378.3
Cco04g1608 . 41 335 Core Cell Cycle Gene Families AT2G22490 54.9 5.1e-83 305.1
Cco05g1187 . 14 335 Core Cell Cycle Gene Families AT4G34160 51.1 9.3e-80 294.3
Cco08g1802 . 47 322 Core Cell Cycle Gene Families AT4G34160 50.9 3.1e-67 252.7
Cco02g0687 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 2.6e-61 233.0
Cco04g1608 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.1e-69 260.4
Cco08g1306 . 126 325 Core Cell Cycle Gene Families AT5G65420 55.0 5.9e-60 228.0
Cco04g1608 . 54 233 Core Cell Cycle Gene Families AT5G10440 59.1 7.3e-56 214.2
Cco08g1306 . 121 299 Core Cell Cycle Gene Families AT5G10440 53.3 2.7e-50 195.7
Cco04g1409 . 80 334 Core Cell Cycle Gene Families AT5G27620 66.3 6.9e-94 340.9
Cco01g1535 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 7.3e-44 172.9
Cco02g2320 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.1e-42 169.1
Cco01g1535 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.4e-39 158.7
Cco02g2320 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 4.0e-39 157.1
Cco05g2970 . 303 1321 Core Cell Cycle Gene Families AT3G12280 72.0 0.0e+00 1414.8
Cco09g0583 . 2 484 Core Cell Cycle Gene Families AT1G02970 60.0 4.6e-159 558.1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87269 PF00069 Pkinase 7.50E-71 CL0016 Cco PK