Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1961 ATGGCGACGATGGCGATGAAGGGCAAAGTTTGTGTTACAGGGGCTGGAGGGTTTATTGGTTCGTGGGTCGTCAAGCTTCTGCTATCCAGGGATTATATTGTTCACGGAACTGTCAGGGAGCCTAGCGATGCTAAGTATGATCACTTGAGAAAACTTGAGAAAGCGACCAAGAATTTGGAACTGTTTAAGGCTGATTTGCTGAACTACGAGTCTCTGCGTTCAGCGATTGCAGGATGTGATGGAGTTTTCCATGTTGCCTGTCCAGTTCCTTCCACAACTTCATCAAACCCCGAGACAGAAGTGATTGAACCTGCTGTAAAGGGCACACATAATGTGCTTGAAGCTTGTGTCGAAGCAAAAATTAAGCGAGTAGTTGTAGTATCCTCAGCCGCTGCAGTGTTTTTCAATCCCAGTTGGCCTCAAGGTCGAGTAATGGATGAAAGTTGTTGGTCCGATATGGAGCACTGCAGAGCTACTAAGAACTGGTATTTTCTGGCAAAAACAAAAGCTGAAAGTGAAGCCTTGGAGTTTGGGAGAAGATGTGGGCTCGACGTTGTGACTATGTGTCCTACTCTCGTTATCGGGCCGGTTTTGCAGGCAACAGTCAACGCCAGCAGCTTGGTCCTTCTCAAAATTCTAAAAGAACGATGTGAGTCGATGGAAAACAGGCTACGGATGTTAGTAGACGTACGAGATGTAGCAGAGGCGCTAGTTCTTTTATATGAGAAGGGGGAGGCAGAAGGAAGGTATATCTGTACCGCGCATACAATTGAGACAAGGGAGCTGGTGGATGCATTGAAGAGGAAGTACCCTGATTATAGCTATCCAAAGAAGTTGCTTGAAGGGAAGGCGGAGTCGGTAAGTCTGAGCTCGGAGAAGCTGCAAAGATTGGGTTGGAAGTATCGGGCGTTAGAGGACACGCTTGTGGATGCTGTCCAGAGTTTCAAAGACGCCGGCATGTTGGAGTGA 969 47.47 MATMAMKGKVCVTGAGGFIGSWVVKLLLSRDYIVHGTVREPSDAKYDHLRKLEKATKNLELFKADLLNYESLRSAIAGCDGVFHVACPVPSTTSSNPETEVIEPAVKGTHNVLEACVEAKIKRVVVVSSAAAVFFNPSWPQGRVMDESCWSDMEHCRATKNWYFLAKTKAESEALEFGRRCGLDVVTMCPTLVIGPVLQATVNASSLVLLKILKERCESMENRLRMLVDVRDVAEALVLLYEKGEAEGRYICTAHTIETRELVDALKRKYPDYSYPKKLLEGKAESVSLSSEKLQRLGWKYRALEDTLVDAVQSFKDAGMLE 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32108373 32111214 + CcPI632755_11g019610.1 Cco11g1961 193197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1961 322 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 9 313 IPR050425 GO:0016616(PANTHER)
Cco11g1961 322 Coils Coil 52 72 - -
Cco11g1961 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 316 IPR036291 -
Cco11g1961 322 Gene3D - 2 322 - -
Cco11g1961 322 CDD FR_SDR_e 10 299 - -
Cco11g1961 322 Pfam NAD dependent epimerase/dehydratase family 10 246 IPR001509 -
Cco11g1961 322 Coils Coil 210 230 - -
Cco11g1961 322 FunFam NAD(P)-binding Rossmann-fold superfamily protein 3 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0041 Cco-Chr6:399347 Cco11g1961 Cco-Chr11:32108373 1.30E-48 dispersed
Cco08g1126 Cco-Chr8:23057007 Cco11g1961 Cco-Chr11:32108373 2.40E-08 dispersed
Cco10g1284 Cco-Chr10:25741373 Cco11g1961 Cco-Chr11:32108373 3.30E-73 dispersed
Cco10g1285 Cco-Chr10:25763290 Cco11g1961 Cco-Chr11:32108373 7.10E-68 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1961 - - - 0.0