Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1961 | ATGGCGACGATGGCGATGAAGGGCAAAGTTTGTGTTACAGGGGCTGGAGGGTTTATTGGTTCGTGGGTCGTCAAGCTTCTGCTATCCAGGGATTATATTGTTCACGGAACTGTCAGGGAGCCTAGCGATGCTAAGTATGATCACTTGAGAAAACTTGAGAAAGCGACCAAGAATTTGGAACTGTTTAAGGCTGATTTGCTGAACTACGAGTCTCTGCGTTCAGCGATTGCAGGATGTGATGGAGTTTTCCATGTTGCCTGTCCAGTTCCTTCCACAACTTCATCAAACCCCGAGACAGAAGTGATTGAACCTGCTGTAAAGGGCACACATAATGTGCTTGAAGCTTGTGTCGAAGCAAAAATTAAGCGAGTAGTTGTAGTATCCTCAGCCGCTGCAGTGTTTTTCAATCCCAGTTGGCCTCAAGGTCGAGTAATGGATGAAAGTTGTTGGTCCGATATGGAGCACTGCAGAGCTACTAAGAACTGGTATTTTCTGGCAAAAACAAAAGCTGAAAGTGAAGCCTTGGAGTTTGGGAGAAGATGTGGGCTCGACGTTGTGACTATGTGTCCTACTCTCGTTATCGGGCCGGTTTTGCAGGCAACAGTCAACGCCAGCAGCTTGGTCCTTCTCAAAATTCTAAAAGAACGATGTGAGTCGATGGAAAACAGGCTACGGATGTTAGTAGACGTACGAGATGTAGCAGAGGCGCTAGTTCTTTTATATGAGAAGGGGGAGGCAGAAGGAAGGTATATCTGTACCGCGCATACAATTGAGACAAGGGAGCTGGTGGATGCATTGAAGAGGAAGTACCCTGATTATAGCTATCCAAAGAAGTTGCTTGAAGGGAAGGCGGAGTCGGTAAGTCTGAGCTCGGAGAAGCTGCAAAGATTGGGTTGGAAGTATCGGGCGTTAGAGGACACGCTTGTGGATGCTGTCCAGAGTTTCAAAGACGCCGGCATGTTGGAGTGA | 969 | 47.47 | MATMAMKGKVCVTGAGGFIGSWVVKLLLSRDYIVHGTVREPSDAKYDHLRKLEKATKNLELFKADLLNYESLRSAIAGCDGVFHVACPVPSTTSSNPETEVIEPAVKGTHNVLEACVEAKIKRVVVVSSAAAVFFNPSWPQGRVMDESCWSDMEHCRATKNWYFLAKTKAESEALEFGRRCGLDVVTMCPTLVIGPVLQATVNASSLVLLKILKERCESMENRLRMLVDVRDVAEALVLLYEKGEAEGRYICTAHTIETRELVDALKRKYPDYSYPKKLLEGKAESVSLSSEKLQRLGWKYRALEDTLVDAVQSFKDAGMLE | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 32108373 | 32111214 | + | CcPI632755_11g019610.1 | Cco11g1961 | 193197 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1961 | 322 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 9 | 313 | IPR050425 | GO:0016616(PANTHER) | |
Cco11g1961 | 322 | Coils | Coil | 52 | 72 | - | - | |
Cco11g1961 | 322 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 3 | 316 | IPR036291 | - | |
Cco11g1961 | 322 | Gene3D | - | 2 | 322 | - | - | |
Cco11g1961 | 322 | CDD | FR_SDR_e | 10 | 299 | - | - | |
Cco11g1961 | 322 | Pfam | NAD dependent epimerase/dehydratase family | 10 | 246 | IPR001509 | - | |
Cco11g1961 | 322 | Coils | Coil | 210 | 230 | - | - | |
Cco11g1961 | 322 | FunFam | NAD(P)-binding Rossmann-fold superfamily protein | 3 | 322 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0041 | Cco-Chr6:399347 | Cco11g1961 | Cco-Chr11:32108373 | 1.30E-48 | dispersed | |
Cco08g1126 | Cco-Chr8:23057007 | Cco11g1961 | Cco-Chr11:32108373 | 2.40E-08 | dispersed | |
Cco10g1284 | Cco-Chr10:25741373 | Cco11g1961 | Cco-Chr11:32108373 | 3.30E-73 | dispersed | |
Cco10g1285 | Cco-Chr10:25763290 | Cco11g1961 | Cco-Chr11:32108373 | 7.10E-68 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1961 | - | - | - | 0.0 |