Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1964 ATGGAGGAGGATCTCCATTTCTCCGAATACGACTTAATAGGGCAGATTGATTGGAACGACTTCTTTGATGAATTCCCGGAGGTGGAGCTCCCTCTTATCGGGGATTCAACATCGCCCCACGGATCTCCTGATTCCTTTTCTTCCTGGATCAACCACCTCGAAAACGCTTTATTGAATGACGATCAAGACAAGGGGGTTTCCCTTCCTACTCCTACCGATGATTGCTGCAGTAGTTTTTTGGCTGACGTCCTCGTCGACTCTCATGGAGGAGCCTCTGTAATCGACCTCGATTCCAATGCTTCCGAGTGCGGTAACCACTTTAGCAGTTCCCAGAAGGAGGATGGACATAAGGTTTCTCCCGCACCTACTGACGATTCCTGTGGTAGTTTTATGGCTGAAGGACTTGTAGATACTCACGGGAGCTCCTCTGGGGTTGATGCTGTAGTTGACGTTCTGTCCAACGCTTCCGATTGCGTTGACGACTCGAACAATTCCCAGAAGGAGAAGATCGACGCAACAAACATCGACGATAGTGTAGGTGAAGATGTCGATGATTCGCTTTCTAAAAAGCGGAGAAGGCAGCTGAGAAATAGGGATGCCGCAGTAAGATCTAGGGAGAGGAAAAAGATGTACGTAAAGGATCTAGAGATGAAGAGTAAATTTCTTGAAGGTGAATGCCGGAGATTGGGGCGTTTGCTCCAGTGTTACTGTGCTGAGAATCAAGCCTTACGGTTTAGTCTACAGATGGGAGGCGCTTCTGGTGCTTCACTGACCAAGCAGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTAGTGGGCACCGTTTGCCTGTTCACCCTTCCTCAACTCACACAATCAACTCTGGAACCTGTTCCAAGAGTAACAATGGAGGACGAAGGTCCAGGAAGCGCGCCTCTCAACGAGAATGAAAATAAGGACTCCAGATACTCATACTCATCGTTACAAACTAGGAGGTGCAAAGCGGCGAGAACAAGGATGAAACCAAGTATGTTGGATGCGATGCTCGGTCCTCGTTTGGCTCTGATTTTGATAGGCTTGGAATTATTATCTAAAGACAAACAAATGCGGAGAATGGATCGGATGTCGCATGTCTTCGGTGCTGAGTTTATGTTATCGAAAACCATGCCCTTACAAGTTACAACCTTCCCTCCTCGCTCACTCTTCACTCTTCTCCTGCATCCTGCATCCGCCATGGACTCCGATTACGGCATTCCCCGTCAACTCTCCGATCTTCAGAAAATCCGCTCTCTCTACCAACCCGACCTCCCTCCTTGTCTCCAGGGAACAGCGGTCAGGGTTGAATTTGGAGATGGCACTACAGCTGTGGATCCTGCTGATGCCCCCACCATTAGTCGGGCCTTTCCCCACACTTACGGTCAACCATTGGCTCACTTTCTCAGGGCAACTGCTAAAGTCCCCGATGCTCAAATTATTACTGTACATCCAGCCATCCGGGTGGGAATAGTTTTTTGTGGAAGGCAATCCCCTGGAGGCCATAACGTCATATGGGGGCTTCATAATGCTCTCAAAGTCCACAACCCAAATAGTATATTGTTTGGATTTCTTGGTGGCTCTGAAGGTTTGTTTTCCCAGAAAACTCTTGAGGTTACCGATGACATTCTTTCAACGTACAAAAATCAAGGTGGTTATGATCTATTGGGACGGACCAAGGATCAAATTCGAACTAAAGAGCAGGTTAATGCTGCACTTAAGACATGCTTAGATTTGAAACTGGATGGTCTTGTCATAATTGGCGGAGTGACGTCAAACACTGATGCTGCTCAACTTGCCGAAACCTTTGCTGAAGCTAAATGCCCCACGAAGGTTGTAGGAGTTCCTGTTACTTTGAATGGCGATCTCAAGAATCAGTTTGTTGAAACAAATGTTGGTTTTGACACTATATGCAAGGTCAATTCTCAGCTAATCAGCAATGTATGCACTGATGCCCTATCTGCAGAGAAGTATTACTATTTCATTCGACTCATGGGCCGGAAAGCATCCCATGTTGCTTTGGAGTGCACTCTTCAATCTCATCCAAATTTGGTTATTCTTGGTGAGGAGGTGGCTGCATCAAAGCTTACTCTTTTTGATTTGACGACACAGATATGTGATGCTGTTCAGGCTAGAGCACAACAAGACAAATACCATGGGGTCATCTTACTGCCCGAAGGGCTCATTGAAAGTATTCCTGAAATCTATGCCCTTTTGAAGGAAATTCACAGTCTACTCAAGCAAGGAGTTCTGGTTGATAATATTTCTTCCCAACTCTCTCCTTGGGCATCAGCGCTATTTGAATTTCTGCCACCTTTCATCAGGAAGCAGTTGCTACTTCATCCTGAATCCGATGACTCTGCTCAGTTATCTCAGATTGAGACGGAGAAACTTTTGGCACATCTTGTGGAGGCTGAAATTAACAAGCGTCTGAAAGAAGGGACTTACAAGGGGAAGAAATTCAATGCAATTTGCCACTTCTTTGGTTACCAGGCTCGGGGATCTTTACCTTCAAAATTTGATTGCGACTATGCCTACGTTCTTGGGCATGTTTGCTACCATATCTTAGCTGCTGGCTTGAACGGTTACATGGCTACTTTAACTAACCTGAAAAATCCTGTGAACAAATGGCGCTGTGGTGCTGCCCCGATTGCAGCCATGATGACTGTGAAGCGTTGGGCTCAAAATCCTGGGGCGTTGTCCATTGGGAAACCTGCAATTCACCCAGCAACTGTGGATTTGAAAGGGAAAGCATACGAGTTATTGAGACAAAATGCGAGTCAGTTTCTTATGGACGATCTGTATAGAAACCCTGGACCTCTTCAGTTTGACGGTCCTGGTGCTGATGCTAAGCCCGTCTCCCTGTGCGTTGAGGACCAGGATTACATGGGCCGCATCAAGAAGCTACAGGAATATCTTGACAAGGTCCGAACAATAGTAAAACCAGGGTGTTCGCAGGAGGTTCTTAAAGCAGCATTAAGCGTCATGGCATCCGTGACTGATGTTCTCTCGGTTATGTCTTCGAGTTCATTCAGCGGAAAAGCATCATTAGAAGGATAA 3093 46.62 MEEDLHFSEYDLIGQIDWNDFFDEFPEVELPLIGDSTSPHGSPDSFSSWINHLENALLNDDQDKGVSLPTPTDDCCSSFLADVLVDSHGGASVIDLDSNASECGNHFSSSQKEDGHKVSPAPTDDSCGSFMAEGLVDTHGSSSGVDAVVDVLSNASDCVDDSNNSQKEKIDATNIDDSVGEDVDDSLSKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSKFLEGECRRLGRLLQCYCAENQALRFSLQMGGASGASLTKQESAVLLLESLLLGSLLWLVGTVCLFTLPQLTQSTLEPVPRVTMEDEGPGSAPLNENENKDSRYSYSSLQTRRCKAARTRMKPSMLDAMLGPRLALILIGLELLSKDKQMRRMDRMSHVFGAEFMLSKTMPLQVTTFPPRSLFTLLLHPASAMDSDYGIPRQLSDLQKIRSLYQPDLPPCLQGTAVRVEFGDGTTAVDPADAPTISRAFPHTYGQPLAHFLRATAKVPDAQIITVHPAIRVGIVFCGRQSPGGHNVIWGLHNALKVHNPNSILFGFLGGSEGLFSQKTLEVTDDILSTYKNQGGYDLLGRTKDQIRTKEQVNAALKTCLDLKLDGLVIIGGVTSNTDAAQLAETFAEAKCPTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNLVILGEEVAASKLTLFDLTTQICDAVQARAQQDKYHGVILLPEGLIESIPEIYALLKEIHSLLKQGVLVDNISSQLSPWASALFEFLPPFIRKQLLLHPESDDSAQLSQIETEKLLAHLVEAEINKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHVCYHILAAGLNGYMATLTNLKNPVNKWRCGAAPIAAMMTVKRWAQNPGALSIGKPAIHPATVDLKGKAYELLRQNASQFLMDDLYRNPGPLQFDGPGADAKPVSLCVEDQDYMGRIKKLQEYLDKVRTIVKPGCSQEVLKAALSVMASVTDVLSVMSSSSFSGKASLEG 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32120320 32130074 - CcPI632755_11g019640.1 Cco11g1964 193200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1964 1030 MobiDBLite consensus disorder prediction 298 325 - -
Cco11g1964 1030 Gene3D - 188 244 - -
Cco11g1964 1030 CDD bZIP_HY5-like 190 241 - -
Cco11g1964 1030 MobiDBLite consensus disorder prediction 162 192 - -
Cco11g1964 1030 NCBIfam diphosphate--fructose-6-phosphate 1-phosphotransferase 425 969 IPR011183 GO:0005524(InterPro)|GO:0006096(InterPro)|GO:0047334(InterPro)
Cco11g1964 1030 Hamap Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 421 972 IPR011183 GO:0005524(InterPro)|GO:0006096(InterPro)|GO:0047334(InterPro)
Cco11g1964 1030 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 244 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1964 1030 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 192 207 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1964 1030 Gene3D - 429 923 - -
Cco11g1964 1030 MobiDBLite consensus disorder prediction 159 201 - -
Cco11g1964 1030 Gene3D Phosphofructokinase domain 645 958 IPR035966 GO:0003872(InterPro)|GO:0006096(InterPro)
Cco11g1964 1030 SMART brlzneu 184 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1964 1030 FunFam Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 743 807 - -
Cco11g1964 1030 Pfam Basic region leucine zipper 187 229 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1964 1030 SUPERFAMILY Leucine zipper domain 189 245 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g1964 1030 Gene3D Phosphofructokinase; domain 3 743 807 - -
Cco11g1964 1030 SUPERFAMILY Phosphofructokinase 423 968 IPR035966 GO:0003872(InterPro)|GO:0006096(InterPro)
Cco11g1964 1030 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 421 1020 - GO:0005829(PANTHER)|GO:0008443(PANTHER)|GO:0009749(PANTHER)|GO:0015979(PANTHER)|GO:0047334(PANTHER)
Cco11g1964 1030 Pfam Phosphofructokinase 499 865 IPR000023 GO:0003872(InterPro)|GO:0006096(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1964 K00895 - - csv:101208728 1171.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1949 Cco-Chr4:33797397 Cco11g1964 Cco-Chr11:32120320 1.20E-107 dispersed
Cco05g1498 Cco-Chr5:18295026 Cco11g1964 Cco-Chr11:32120320 3.10E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g32 Blo01g01654 Blo12g00839 . . Bpe02g00289 . Bma04g00305 Bma01g02425 . . . Cma09g00015 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02428 Csa04g02744 . . . . . . . . . . . . Cmo09g00014 . . . Car09g00014 . . . . . . . . . Cla11g01858 Cam11g1925 Cec11g1952 Cco11g1964 Clacu11g2090 Cmu11g1893 Cre11g2301 . . Chy07g00432 Cme07g00018
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60323 PF00365 PFK 4.00E-29 CL0240 Cco TF