Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1967 | ATGCGTTTTCGCTCAGTGATCACTCCATTATCAGGGATGGCAATGGCGCTAGTTCAGCCACACACTTCAGCTTCTGCAATTTCGTCTTCCTCCGCCTCATTCTACAGAAGTTCTTTTCAGCAACTCCGTTCGCGGACCACGACCCTTGATCTTCGAAACAGCCACTCCATCCCTCATCGTTCCACTTGCAGAGCTTCCTGGCAGGAGCTTGCAGGGGTTCTGATATTCTCTGCAATTCCTTTCACGGCGGTGAAAGCCATCGCCAATAGTCCACTTGGAGAGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAAAGCTGCCGTAGCCAACTCTTCGAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAATAGATAGCTCATGGTATGGAGAAGGGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTTCAGAAGTACTTCAACTTTGAAATACTGCATGCTCGTTGGGCTATGTTAGCATCCCTTGGAGCTTTAGTTCCAGAAATCTTAGATATTTTTGGAGCTTTTCATTTTACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCATTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCTATTTTGATGGTTGGACCCGAATATGCAAGATATTGTGGCATTGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATTAATTATCCAGGTGGTGTGTTGTTTGACCCCTTGAATCTGTCCAAGGATGCTGCAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGCCCTCTTGCAATTGGGAATTGCATTTCAATTTGGCAGCTCGAGAATGATTTGTTGGGTTGCAATGGAGCCAAGTGTAGGTCTACTGTCTCCCCTCTCTTCTCTCCCCATTCTCTGAATCAGTTCTCAAGATCTGCATCTGCGAATCTCCCACATTCATGTCTCCTACTCGATGATCTTCTCTACTCGATCTGCCAAATTCAACTCACTCCTCCACTTCTGCTTCAGGTAACTCTCTCTCCTTCAGCAATCTCCCTCTGTGATTGCCTTTGGGAGTGTTTGCTTCTTTCATTCGAAATGATGGCTGACATGGATGTGCTCGCTGACACATCTGAGGTTAACGAGAAGTGTGCCTTGGATATGAGTACCTACGAGAATTTGCCTAAAGGTTGCAATGCAGCATCTCTTCACTGTGCTACTCCCATTCCTAAGGATGATACCGACGGTTCTTACGTTTTCGTTAGCTCCACCGATGCTGCTACTTCCGATGATCACGTTGCTTCGGATCTTAATGGGCAAGCAGAGTGTTCTCAGAATGTTGATACGGAGATTATGGTTCGTAATCGGGAATTGAATACTGACGTCGGTAGGAAACCTGAATCAATTATCGTTTCCGATGCATTGGAGGATTCCCAATTCGAATTTTCTGAGCATGTGAAAGAGAATGACGCAATTCAGGATGAGATCAGAGTGGCGGATGTCCTTCAATCTTCCGACGCCAAGGTGGATGAAGCGGAACCTGGACTGGATTCTTCTCAGACGGTGGAAGAAACTCGAATCCTAGAGGACCAGACTATCAACGTATCTTTTGACGCAGAGACAAATTCTGGCGAAATCCATGGGGTACAGTCTCCTCAAGCAGTTGAAGACAATCAGATTCAGGAGGAAAATCAAAGAATTTCTACCTCTGGATCTTCTAACACCGATGCAAATCGTTGTGGAGAAATCGAGGTGGAGTCTTCCCAAATGGCGGAAGATATTAAAAGTCATGAGGATAACGGAATTGTGAAAATCATGAAGTCTTTTGATACCGAAACAAATCATGTGATAAACATCGAGGCGGAGTCTTCTCCGAAGGCAGACGGCATCCACATTCACCAAGAAAATGGAACGGTTGCAATCAAGTTTTCTGATTTTGAGTCAAACCCTGGGGAAGAAATTGAGGTGGAGCCTTCTCAGAAGGCAGACGACATTCAGAATCACGAGGAAAATGGCATAATGAAATCCTCTTCTGATACCGAGGCAAACCCTAGGTCAGAAATTGAGGTGGAGTCTTCACGGGAGGTTGAAGACATTGAGATTCAGGAGCAAGATGAAGTAGTGGATGCCATCAAATCTTCTGCTACAGTGGAAAAGCGTGGGCAAGAAGGTGAAGTAATCCCCGAGTATAATGACACAGTGGCTATCAATGAATTGTCTGATACCATACATAACAGCAGTAAAGAAACTGGGATGGAATCTTTCGAGAGAGAGGAAGGCATTCGAGAGTCAGAAGATGCAAATTTGGAGGCTGCTGACTGCCATTATGTTAATGGCAAAGAGAAGGTTGATGAGATGGTAAATAAAGCTGTGATAAGCGACCCTGTGGGAGGAATAGGAGAATTTCAAATTATAAGTATGGGTGCTGCTGAACCTGACCTAGATGATTCTGATGATACCATGGAGGACGTTAAGAGGGAATGTACATCAGGGGTTGCCTTGAATGAGGAGAACTCTAAGAAAACTCAATTAACAATTAGTCAGGATGGTGAACATTACCAGGTTGTTGGTGAGGAACAAGAAAATTTAAACAATGAAGTTTCTCTTTTGGAGCCATCAGAAGAAAACAAAGCGGACGTGGAGCAGCATTTGGCAGCAGCTCCTAGTCCACTGGTCAGTTCAGAAGACATAAATGGTTCTATCTCCATTAGCACGGAAGATGGCTTGCCAACTAGTATGGATCAAGATGTCCCCTTGGGAACTATTGATGACAAAGACACTGTAGCTAACTGGACCAACTTCCATGACCACACTGAATCCTCATCTGGCTCTGTAGATTGTGATGTCGCTACTGTTGAAACTCATCAATTATCTCCTGAGATGCTTATTAGTGATCCAATAGAGTTAAATGAGATTTCTGTGAATGATGAACAAGAGGTGAATCATGTGTTGGAACTAGAAGAGAATTCAGAAATGGCATCTCATCCTAAAGTAGATGAATGTGTCAAGGTTGAAGTTTTGGAAGGTACGGTCTCTGGAAATGGAGATGAGGTGCCCACTGCATTCGACGAATCTAGAATTTCTTGTGGTGATGACTTTGTTGCCGGCAGTCAATTAATCGCCGGGGGCACTGAACCAGTGGAAAGCATTGACACAGTATCTGCTGTTGTGATAGGAAATACTTCAATTGAAATAAGGGAACTGGGCTCTACGAATTGTCCCAATGATCCAGTAGTGAGATCCGATCTTGATGTTCAGGATTGTAAAGTGTCTGAAATTGTGGCTTCTGTGGGTGATGTTGTCCGAGCGGATAAAGAAGTCTGGGCAAATCATGAGGTTGATTTTCTTGGTAACTCTAATTTCGAAACCAAGTGTGAGAATGGTAGCGTTGAAAAAGATCACCAAGGAACTTTCCATAGTAATGATTTTACGTCAATTGAATGTCAAGAGAGAGGTTCCACTGTTCCTGAAATTCCTAATGGTGTCAATAAATCTTCTGCAATTCAACTAAGTTCTGCTGTTGCAACAGACTCGGAATTGCATGATAATGGAAGTTGCTCAATTCCTATTGCTAATAAGAAATCTGGAGACATCAAGATTCCATCCTCCAAAGGAGGTGGTAGCAGAAATATATCTGGCGATGATTGCAGTGTGTCAAAAACTGATGTTCTCAAGGGTTCTATAGTAAACGATGAAGGGAATCTGAACTCAACGTCTGATGTTGTCTCTGAAACTGATGATAAGCCAGCAACAGAAGGAACTCAGGTCATTCATGAGGGTTACCAGAATGAACCTTCACCTATTTCTCCAGAAGGTTCTGGTGACACTATAACGGGGCAAAATGTAGGGGCTGAGGCAGGAACAAGGCCGTTTAACTTTTTGGTTAAGGTACCTAGATTCGATGACAAAAATATAAGAGAGCAGATTAAGTGTGCTCAGACAGAAGTTGATTGGAAGACAAAGGATCGAGATGCCATTCGGGTTCAAATACAGACAATGAGGGCTGCATGGAAAGTGTTGAGTGATAATCTTGAAGCAGCAGTGTCGGAAGGAAGAGCTGCAAGAGACTTGCTCAAGTCAAAAAGACTGGAGATAGACTCTGTTCAATCAGTGATAACAAAAGTGAAGAATGCCATGTCTGTTGAGGATATTGATGGCAGGATACGCAACATTGAACATATGATAGAGCATGAAACACTGCCATTAAAAGAAGAAAAACAATTAATTCGTGAAATCAAGCAATTGAAGCAGCTGCGGGAACAGCTTTCATCAACTATGGGTAAGCAGGATGAGCTTCAACAGGCATTGGACCAGAAAGACCAGATTGAAGAGCGCCTTAAGCTATTAAGAAAGGAGATGGATTTACTGAGAGACAATGTTGTGAAAGCTGAATCAGTTATAAAGGCTGCCAAGAAGAAATATAATGATGAAAGCATTAAGCTAGATGAATTGCAATCCCAGTTTAAAGCAGCAGATAAGATTCGCCAAGAAGCATATGCTAATTTACAGAGTATGAGGAAGCAATTATATGAGAAGAACAAATACTGCTGGAAGTATCGGGATGACGCAAAGGAAGCCAATGAAATAGCGTCAAGTCGAGATCTGGAGAGACTGCAACATTTTTGTGTTAATCAGGTGGAGCGCATGATGGAACTGTGGAACACAAATGCTGAGTTCAGGGAAGAATATATTAAGAGCAACATGAGGAGTACCCTGAGGCGACTAAAGACATTGGATGGCCGCTCCCTTGGCCCTAATGAAGAGCCGCATGTACTGAATCTTGTTGTTAAGGAGGGACCAGCGAGGGACAATTCTCTTTCAACGGTTTCAACAACGAAGGAATCTGAAAAATTGATACCTGCTGATGATGCGAGAGACAATGACAAACCAGGGACCAAAGTAGCTGAAACGAAAAATCAAATGACAAAAAGGAAGAGGCCTGAAACAGTTCTGGCTTTAGTGAATGACCCTAGGAATATCTCTAGCGAGAACGAGGTAGAAGAGCCACCACGACCGGAGGAGATTAAGCGAACAAGAGAGGAAGAGGAGGTGGCGGCAAAAGCAGAAGAGTTGAGAAAGGAAGAGGAAGCAAGGAAGTTGAAGGAGCAACGGAAGTTGGAAGAGAAGGCCAAAGCCAAAGAGGCGTTGGAGAGGAAAAAAAGAAATGCTGAGAAAGCCCAGGCCAGGGCAGTAATCAAAGCACGAAAAGAGGCAGAAGAGAGGGAGAAGCTAAGGGAGAAGAGAGCAAAAAAGAAGGAAAGGAAGATGGCAGCTGAGACGGAAGCTGGAAATGGTTGGGATGAAAGGGAATCTGCTTTAGTCACCGAAAAGCCTTCAGAAGCTCCGAAGGAGGAGTCTGAAAACACAGGTAAACAGGGGATGGCACTGGCAGGGAAGAGGCCTCTAAAAGCGTCGCAGTACACAAAGCAGAGCAAGACAAAGTCAATTCCTCCGCCACTTCGAAATCGTGGTAAGAGGAGGATGCAACCATGGATGTGGGTTCTTCTGACAACCATGGTTGTTTTTGCGCTGTTCTTCGTTGGACAACAACGGCTGCTCTACTAG | 5730 | 44.14 | MRFRSVITPLSGMAMALVQPHTSASAISSSSASFYRSSFQQLRSRTTTLDLRNSHSIPHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQLEKKKKAAVANSSKFKALAEEARIDSSWYGEGRPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGPLAIGNCISIWQLENDLLGCNGAKCRSTVSPLFSPHSLNQFSRSASANLPHSCLLLDDLLYSICQIQLTPPLLLQVTLSPSAISLCDCLWECLLLSFEMMADMDVLADTSEVNEKCALDMSTYENLPKGCNAASLHCATPIPKDDTDGSYVFVSSTDAATSDDHVASDLNGQAECSQNVDTEIMVRNRELNTDVGRKPESIIVSDALEDSQFEFSEHVKENDAIQDEIRVADVLQSSDAKVDEAEPGLDSSQTVEETRILEDQTINVSFDAETNSGEIHGVQSPQAVEDNQIQEENQRISTSGSSNTDANRCGEIEVESSQMAEDIKSHEDNGIVKIMKSFDTETNHVINIEAESSPKADGIHIHQENGTVAIKFSDFESNPGEEIEVEPSQKADDIQNHEENGIMKSSSDTEANPRSEIEVESSREVEDIEIQEQDEVVDAIKSSATVEKRGQEGEVIPEYNDTVAINELSDTIHNSSKETGMESFEREEGIRESEDANLEAADCHYVNGKEKVDEMVNKAVISDPVGGIGEFQIISMGAAEPDLDDSDDTMEDVKRECTSGVALNEENSKKTQLTISQDGEHYQVVGEEQENLNNEVSLLEPSEENKADVEQHLAAAPSPLVSSEDINGSISISTEDGLPTSMDQDVPLGTIDDKDTVANWTNFHDHTESSSGSVDCDVATVETHQLSPEMLISDPIELNEISVNDEQEVNHVLELEENSEMASHPKVDECVKVEVLEGTVSGNGDEVPTAFDESRISCGDDFVAGSQLIAGGTEPVESIDTVSAVVIGNTSIEIRELGSTNCPNDPVVRSDLDVQDCKVSEIVASVGDVVRADKEVWANHEVDFLGNSNFETKCENGSVEKDHQGTFHSNDFTSIECQERGSTVPEIPNGVNKSSAIQLSSAVATDSELHDNGSCSIPIANKKSGDIKIPSSKGGGSRNISGDDCSVSKTDVLKGSIVNDEGNLNSTSDVVSETDDKPATEGTQVIHEGYQNEPSPISPEGSGDTITGQNVGAEAGTRPFNFLVKVPRFDDKNIREQIKCAQTEVDWKTKDRDAIRVQIQTMRAAWKVLSDNLEAAVSEGRAARDLLKSKRLEIDSVQSVITKVKNAMSVEDIDGRIRNIEHMIEHETLPLKEEKQLIREIKQLKQLREQLSSTMGKQDELQQALDQKDQIEERLKLLRKEMDLLRDNVVKAESVIKAAKKKYNDESIKLDELQSQFKAADKIRQEAYANLQSMRKQLYEKNKYCWKYRDDAKEANEIASSRDLERLQHFCVNQVERMMELWNTNAEFREEYIKSNMRSTLRRLKTLDGRSLGPNEEPHVLNLVVKEGPARDNSLSTVSTTKESEKLIPADDARDNDKPGTKVAETKNQMTKRKRPETVLALVNDPRNISSENEVEEPPRPEEIKRTREEEEVAAKAEELRKEEEARKLKEQRKLEEKAKAKEALERKKRNAEKAQARAVIKARKEAEEREKLREKRAKKKERKMAAETEAGNGWDERESALVTEKPSEAPKEESENTGKQGMALAGKRPLKASQYTKQSKTKSIPPPLRNRGKRRMQPWMWVLLTTMVVFALFFVGQQRLLY | 1909 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 32142907 | 32164348 | + | CcPI632755_11g019670.1 | Cco11g1967 | 193203 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1967 | 1909 | MobiDBLite | consensus disorder prediction | 1284 | 1336 | - | - | |
Cco11g1967 | 1909 | SUPERFAMILY | Chlorophyll a-b binding protein | 126 | 328 | - | - | |
Cco11g1967 | 1909 | PANTHER | RNA-BINDING PROTEIN YLMH-RELATED | 1210 | 1901 | - | - | |
Cco11g1967 | 1909 | MobiDBLite | consensus disorder prediction | 1231 | 1245 | - | - | |
Cco11g1967 | 1909 | FunFam | Chlorophyll a-b binding protein, chloroplastic | 134 | 342 | - | - | |
Cco11g1967 | 1909 | MobiDBLite | consensus disorder prediction | 1671 | 1706 | - | - | |
Cco11g1967 | 1909 | Coils | Coil | 1460 | 1542 | - | - | |
Cco11g1967 | 1909 | MobiDBLite | consensus disorder prediction | 1656 | 1878 | - | - | |
Cco11g1967 | 1909 | MobiDBLite | consensus disorder prediction | 1309 | 1336 | - | - | |
Cco11g1967 | 1909 | Pfam | Chlorophyll A-B binding protein | 144 | 319 | IPR022796 | - | |
Cco11g1967 | 1909 | MobiDBLite | consensus disorder prediction | 1231 | 1271 | - | - | |
Cco11g1967 | 1909 | MobiDBLite | consensus disorder prediction | 1716 | 1842 | - | - | |
Cco11g1967 | 1909 | Coils | Coil | 1732 | 1816 | - | - | |
Cco11g1967 | 1909 | Gene3D | Chlorophyll a/b binding protein domain | 134 | 336 | - | - | |
Cco11g1967 | 1909 | MobiDBLite | consensus disorder prediction | 1285 | 1299 | - | - | |
Cco11g1967 | 1909 | MobiDBLite | consensus disorder prediction | 603 | 633 | - | - | |
Cco11g1967 | 1909 | MobiDBLite | consensus disorder prediction | 727 | 750 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g1167 | Cco-Chr10:24263188 | Cco11g1967 | Cco-Chr11:32142907 | 1.30E-40 | dispersed | |
Cco11g1413 | Cco-Chr11:26888750 | Cco11g1967 | Cco-Chr11:32142907 | 2.00E-23 | dispersed | |
Cco11g1854 | Cco-Chr11:31227036 | Cco11g1967 | Cco-Chr11:32142907 | 3.20E-25 | dispersed | |
Cco11g1967 | Cco-Chr11:32142907 | Cco04g2218 | Cco-Chr4:35799355 | 4.90E-44 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1967 | - | - | - | 0.0 |