Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1969 ATGGACGACCTCGGTGCCCAAGTTGTTCCTCCTATTTTCATCCACCAACCCTTGACCAGTCGCTACGCTGATCTGCCTTCCATCCCCAAGAAGCGTGCCTTATCGTATCAGGTCCCCAACTTCCATCATCAGGGTCAACTCCATCCCCATACTTGGAACCCTAAGGCTTGGGATTGGGACAGCGCAAGATTCCTCACCAAACCCTCCAACCACTCCGATACTCTCTCATCCGAGCTCAAGAGGAAAGACGATTTCACTGCTGCTACTCCCTCCTCCATCCACAAGAAGACGGTCGACGTTCTGGATGACGAGGATGACAGTCTTCGCCTTAATCTTGGTGGTGGTTTGAATTTGAATTACGTTGAGGAGCCAGTGTCTAAACCCCCCAAAAAGGTCCGCCCTGGATCTCCCGGCGCTGTCACCTACCCTATGTGCCAGGTCGATAATTGTAAGGAAGATCTATCCAATGCCAAAGACTATCACCGGAGACACAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACAGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCATCCTCTTTCGGAATTTGATGATGGGAAGAGGAGCTGTAGGAGGAGACTAGCGGGGCACAACTGGCGTAGAAGGAAGACACAGCCCGAGGATGTAACCTCAAGGCTGACCCGGCCAGGAAGTAGAGGACCCCCAAGCACTGGGAATTTGGACATCGTCAGTTTATTGACTGTTCTAGCTAGGGCTCAAGGTAAAAACGAAGACCAGAGCGTGAAGAGCTTGTTGTCAGCAAATAGTGACCAGCTCATTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCAGCCGACCTTGCAGCGAAGTTGCCCAATTTAGAGAATTTTAGGGGGAAGGCTCCTCCACAAAGTTCTTTGCAGCACCAAAACAAATTAAATGGAAATCCATCTTCTCCTTCCACCATGGACTTGCTTACTGTACTTTCAGCTACTTTAGCCACATCAGCTCCAGATGCTCTTGCAATGCTGTCCCAGAAGAGCAGTGTCAGCAGTGATAGTGAAAAAACAAGGTCATCGTGCCCATCTGGTTCTGATCTCCAGAATAGGCCTATGGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACCAGTTACCAGTCTCCCATGGAAGATTCGGATGGACAGGTTCAAGGAACTCGAGTTGGTTTGCCACTTCAGTTGTTTGGCTCTTCGCCTGAACATGAAGCCCCACCGAACTTGGCCGCTTCTAGAAAGTACTTCTCTTCTGATAGTAGTAATCCTATTGAGGAGAGGTCTCCGTCATCTTCACCTCCTCTCCTGCAAAAGTTGTTCCCAGTGCAAAGCACAGAAGAAACTACCAGTAATGGGAAAATACCAATCAGAAAAGAAGTTAGTGGCATTGAGGTTCGAAAGCCTCCCAGTAGCAATATTCCCTTTGAACTCTTCAGAGAGTCAGATAGAGCCAGACCAAATTCGTTTCGAACTGTTCCGTATCAAGCTGGATACACTTCTTCGGGTTCTGATCATTCACCTTCTAGTTTAAATTCTGATGCTCAGGATCGCACTGGAAGGATAAGTTTTAAACTCTTTGACAAGGATCCCAGTCAGTTTCCAGGGACATTGCGGACACAAATATACAATTGGCTGTCTAATTGTCCATCTGAAATGGAAAGCTACATACGGCCTGGTTGCGTGGTTCTGTCAGTTTATATGTCTATGTCATCCATTGCATGGGAACAGCTTGAAGAAAATTTGGATCTGCATGTTAAATCTTTGATTCATAGCGAAGAGCTTGATTTTTGGAGAAGTGGAAGATTTTTAGTTTATGCTGGGAGGCAACTAGCGTCACACAAGGATGGGAAGATTCGTCTGAACAAATCCTCAAAAGCATGGAGTAATCCAGAGTTAATCTCGGTGTCACCTTTGGCAGTTGTGGGTGGACAAAAGACCTCCTTTTTATTAAGGGGAAGGAATTTGAAAAATCCTGGCACCAGGATTCATTGCACGTCTATGGGAGGCTACGTATCTGAAGAAGTAATGGGATTAAGTAGGCAGGGAAAATATGATGAGATACATTCTGGAAGTTTCAAAGTTGGGGATGTATCACCTACTACTCTTGGTCGTTGTTTCATTGAGGTGGAAAATGGTTTTCGAGGAAACAGTTTCCCTGTTATCATAGCTGATGCTACCATCTGTAGGGAATTGAGACATCTTGAGTCCGATTTTGATGAGTTTAAAGTACCCGATATCAGTTCAGAAAGTCATTCATATGCTCCTTCGCAGCCAAGGCTAAGGGATGAAATTTTGCAGTTCTTGAATGAACTTGGATGGCTATTCCAAAGGGAAAGGTTCTCTTACGAGCTAGATAATCCAGATTTTTTAATAAGGCGGTTCAGATTTTTACTCACATTCTCAGCAGAGAGGGACTTCTGTGCGTTGGTGAAAACACTTCTTGACATTTTGGCAAAAAAATGCTTGATCACAGATGGACTGTCAATGAAATCATTGGAGATGATATCTGAGATTCAGCTCTTAAGCCGGTCAGTGAAAAGGAGGTGCAGGCGGATGGTTGACTTACTTGTTCATTATCACATATCTGGCTTTGGTGATGCAGAGAAAAAATACCTCTTTCCACCCAATTTTATTGGTCCTGGTGGTATTACGCCTCTGCATTTGGCAGCGTCAATGACAGATGCAGATGATTTGGTTGATGCACTAACAAATGACCCGCTGGAGATTGGGTTGGAGTGCTGGAGTTCCCAACTTGATGAAAACGGACAGTCGCCACGGGCTTATGCTTTAATGAGGGGTAATAATTCTTGTAATGAGCTGGTGGAGCGAAAACTTGGTGACAGAAAGAATGGTCAAGTTTCAGTAAGAATTAGGAATGAGATAGAGCAACTAGAGGTGTCAAGTGGTGAGCGATGCAGGGTGCAAAGTAGGTCCTGCTCCAGGTGTGCTGTTGTTGCAGCAAAGTGCAACAGGAGGGTTCCTGGGAGTGGTACACACAGGTTGCTTCATCGGCCCTACATTCATTCAATGCTTGCTATAGCTGCCGTTTGCGTTTGCGTGTGCCTATTTTTGCGAGGTTCCCCGGACATTGGTTTAGTTGCACCCTTCAAATGGGAGAACTTGGGCTATGGGACAATTTAG 3186 45.76 MDDLGAQVVPPIFIHQPLTSRYADLPSIPKKRALSYQVPNFHHQGQLHPHTWNPKAWDWDSARFLTKPSNHSDTLSSELKRKDDFTAATPSSIHKKTVDVLDDEDDSLRLNLGGGLNLNYVEEPVSKPPKKVRPGSPGAVTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTRPGSRGPPSTGNLDIVSLLTVLARAQGKNEDQSVKSLLSANSDQLIQILNKINSLPLPADLAAKLPNLENFRGKAPPQSSLQHQNKLNGNPSSPSTMDLLTVLSATLATSAPDALAMLSQKSSVSSDSEKTRSSCPSGSDLQNRPMELPSVGGERSSTSYQSPMEDSDGQVQGTRVGLPLQLFGSSPEHEAPPNLAASRKYFSSDSSNPIEERSPSSSPPLLQKLFPVQSTEETTSNGKIPIRKEVSGIEVRKPPSSNIPFELFRESDRARPNSFRTVPYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFDKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSVYMSMSSIAWEQLEENLDLHVKSLIHSEELDFWRSGRFLVYAGRQLASHKDGKIRLNKSSKAWSNPELISVSPLAVVGGQKTSFLLRGRNLKNPGTRIHCTSMGGYVSEEVMGLSRQGKYDEIHSGSFKVGDVSPTTLGRCFIEVENGFRGNSFPVIIADATICRELRHLESDFDEFKVPDISSESHSYAPSQPRLRDEILQFLNELGWLFQRERFSYELDNPDFLIRRFRFLLTFSAERDFCALVKTLLDILAKKCLITDGLSMKSLEMISEIQLLSRSVKRRCRRMVDLLVHYHISGFGDAEKKYLFPPNFIGPGGITPLHLAASMTDADDLVDALTNDPLEIGLECWSSQLDENGQSPRAYALMRGNNSCNELVERKLGDRKNGQVSVRIRNEIEQLEVSSGERCRVQSRSCSRCAVVAAKCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGYGTI 1061
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32168942 32173528 + CcPI632755_11g019690.1 Cco11g1969 193205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1969 1061 MobiDBLite consensus disorder prediction 507 529 - -
Cco11g1969 1061 MobiDBLite consensus disorder prediction 302 324 - -
Cco11g1969 1061 MobiDBLite consensus disorder prediction 428 451 - -
Cco11g1969 1061 MobiDBLite consensus disorder prediction 299 324 - -
Cco11g1969 1061 SUPERFAMILY SBT domain 143 223 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco11g1969 1061 FunFam Squamosa promoter-binding-like protein 14 137 206 - -
Cco11g1969 1061 MobiDBLite consensus disorder prediction 225 241 - -
Cco11g1969 1061 ProSiteProfiles Zinc finger SBP-type profile. 142 219 IPR004333 GO:0003677(InterPro)
Cco11g1969 1061 MobiDBLite consensus disorder prediction 348 401 - -
Cco11g1969 1061 MobiDBLite consensus disorder prediction 211 241 - -
Cco11g1969 1061 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 57 1059 IPR044817 GO:0003677(InterPro)
Cco11g1969 1061 MobiDBLite consensus disorder prediction 381 398 - -
Cco11g1969 1061 Gene3D - 136 206 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco11g1969 1061 MobiDBLite consensus disorder prediction 348 373 - -
Cco11g1969 1061 Pfam SBP domain 145 218 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1969 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1169 Cco-Chr10:24282185 Cco11g1969 Cco-Chr11:32168942 1.70E-120 dispersed
Cco10g1722 Cco-Chr10:30771984 Cco11g1969 Cco-Chr11:32168942 9.00E-30 dispersed
Cco11g1845 Cco-Chr11:31129687 Cco11g1969 Cco-Chr11:32168942 4.10E-28 dispersed
Cco11g1969 Cco-Chr11:32168942 Cco06g0208 Cco-Chr6:2185093 6.60E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g24 . . . . . . . . . . Cma01g02053 Cma09g00010 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02436 Csa04g02750 . . Blo17g00912 . . . . . . . . Cmo01g02108 Cmo09g00010 . . . Car09g00010 . Cpe02g00006 . . . . . . . Cla11g01862 Cam11g1930 Cec11g1956 Cco11g1969 Clacu11g2095 Cmu11g1897 Cre11g2307 . . Chy07g00438 Cme07g00013
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60324 PF03110 SBP 3.60E-29 No_clan Cco TF