Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1970 ATGCTCCAGCTTCTTCTTCTGCCATTCATTCTTTTAGCATCTTCTTCTGCGGCCGTTGACACTAAGCCCGGATGCCCTTCCAACTGTGGAAACGTCTCCGTTCCCTATCCTTTCGGCATCGGCGTTGGTTGTTACATGGCCACCGGGTTTGACGTAACTTGCAATTCTTCGTATGATCCTCCATTACCTTTCCTAGGTACTGGTAACCTTCAAGTTGTGGAAATTTCTCTAACTAATCTCCGCATACGCAACTTTGTTTCTTTCAATTGCTACACCCAAACTGGTGCTCTCGCCCAGAGATCCAGCTCCTGGATCAACTTGGGCCACCTCCCTATGTTCTTCTCCACCACCAACAAGTTCACCGTCATCGGCTGCGACACCCTGGCTTTGATCAGTGGCTCCGAGGGGCTCTCCTACACCAGTGGATGCGTCTCCATCTGCTCCAGCAAGGAAAGCGTGATCAATGGCTCTTGTTCTGGCATCGGGTGTTGCCAGACTGCCGTCCCCAGAGGCCTAAAGCGCTTCCAGAGCATGATTGGGAACCTCAACAACCACACCAAAACCTGGCAGTACAATCCTTGCAGTTACGCCTTCCTGGTTGACCAAGATCGCTACAACTTCGAGGTGTCTGATCTGGCGGATCCCAACTTTCTGGCCACCATTCAAAGCTTGCCAGTGGTTTTGGATTGGGTGGTGGGTAACCTGACATGTGAAGAGGCTCGGAAAGGCTTCTCAACCTACGTTTGTCAAGCCAATTCCGAATGCTATGATTCAGAGAGTGGAAGCGGTTATCAATGTGGTTGCAGCCCAGGTTTCAGTGGGAACCCATATCTCACTTCTGGATGCCAAGACATTGACGAGTGTGCAGGCCCCAGCTACCCTTGCGAGGGCATATGCGTGAATACCCCTGGCAGTTATTACTGCTCATGTCCCCACGGTTCTTATGGTGATGGTAAGAAGGACGGCAAGGGCTGCATTACCAAAACCAAGCAATTTCCACTTATTCAACTCTCCCTTGGTCTTGGCTCCACTCTTCTCTTCCTTATCGTCACAGCCACTTGGCTTTACTTCACCATCAAGAAGAGGAATCTCATTAAACTTAGAGAGAAATTCTTCCAACAAAACGGAGGATTCTTATTGCGCCAGCAGTTATCCCAACACCAAGCTGCCGTTGACTCCACAAAAATCTTCACGGCAGAGGAGCTGGAGAAAGCGACCGACAATTATGCTGAGACCCGAATTTTGGGCAAAGGCGGAAACGGGACTGTGTACAAAGGAATTCTGCCAGACGGCAAAATAGTGGCCATTAAGAAGTCCAAGATAGCAGATGAAAGCCAAATTGAACAATTCATCAATGAAGTCATAATTCTGGTCCAAATCAACCACAGAAATGTGGTGAAGCTCTTGGGATGCTGCCTAGAGACGGAGGTTCCTCTGCTTGTCTACGAATTCGTGTCCAATGGGACTCTACATGCCCATATTCATGACAACAACAGCTTTAATAGTAATTCTCTGTCTTGGGAGAACCGGTTGAGAATAGCGACGGAAACAGCTGCAGCTCTTTCCTACCTGCACTCTGCAGCGTCCACACCCATCATTCACAGAGACGTGAAATCGGCGAACATATTGTTGGACAACAAATGCACTGCAAAAGTAGCCGATTTTGGAGCATCCAAGTTTATCCCAATGGATCAGTCGCAGATCACGACGTTGGTTCAAGGGACGTTTGGTTACTTAGACCCAGAGTATTTCCAAACGAGTCAATTGACAGAGAAGAGTGACGTGTACAGCTTTGGGGTGGTACTGTTAGAGTTGTTGACGGGAGAGTTGCCAGTGTCGTTCGAGAGATCGGAATCCCAGAGAAACCTGTCGTCGTATTTTGTAGCGTCGTTGCGTGAGAAGAGGTTGTTTAGGATACTGGAGGGAAGAGTGCTGAGGGAGGGAAAGAGAGAGCAACTGATAGCAGCAGCGGAGCTAGCCAGGAGATGCTTGAAGCTGAAGGGGGAAGACAGGCCCAGAATGAGAGAAGTGGTGTCGGAGTTAGAACGGTTGAGAAGGGAAGGTGAAGGTGAAGGTGAAGGTGTAAATGAGGAAGAGACACAAACTTTGTTGGAACCACAACAACAATATGCCTTAAACTCACTGGATTTGTACCCCATTTCCACTTCTACTTTTCAAGCCCATGTCTACAATTACGAAGCATTCGTATCCGAGTCTAGTTCTTCCCAATACCAATACGACGTCGGATCCTCCTCCTCCACATCCCATCTCGTTCATTCATTCCACCTCTCACGATGA 2298 48.65 MLQLLLLPFILLASSSAAVDTKPGCPSNCGNVSVPYPFGIGVGCYMATGFDVTCNSSYDPPLPFLGTGNLQVVEISLTNLRIRNFVSFNCYTQTGALAQRSSSWINLGHLPMFFSTTNKFTVIGCDTLALISGSEGLSYTSGCVSICSSKESVINGSCSGIGCCQTAVPRGLKRFQSMIGNLNNHTKTWQYNPCSYAFLVDQDRYNFEVSDLADPNFLATIQSLPVVLDWVVGNLTCEEARKGFSTYVCQANSECYDSESGSGYQCGCSPGFSGNPYLTSGCQDIDECAGPSYPCEGICVNTPGSYYCSCPHGSYGDGKKDGKGCITKTKQFPLIQLSLGLGSTLLFLIVTATWLYFTIKKRNLIKLREKFFQQNGGFLLRQQLSQHQAAVDSTKIFTAEELEKATDNYAETRILGKGGNGTVYKGILPDGKIVAIKKSKIADESQIEQFINEVIILVQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLHAHIHDNNSFNSNSLSWENRLRIATETAAALSYLHSAASTPIIHRDVKSANILLDNKCTAKVADFGASKFIPMDQSQITTLVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLLELLTGELPVSFERSESQRNLSSYFVASLREKRLFRILEGRVLREGKREQLIAAAELARRCLKLKGEDRPRMREVVSELERLRREGEGEGEGVNEEETQTLLEPQQQYALNSLDLYPISTSTFQAHVYNYEAFVSESSSSQYQYDVGSSSSTSHLVHSFHLSR 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32175938 32178403 + CcPI632755_11g019700.1 Cco11g1970 193206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1970 765 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 299 310 IPR000152 -
Cco11g1970 765 FunFam Fibrillin 2 283 321 - -
Cco11g1970 765 SMART egfca_6 284 326 IPR001881 GO:0005509(InterPro)
Cco11g1970 765 Pfam Calcium-binding EGF domain 284 325 IPR049883 -
Cco11g1970 765 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 699 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cco11g1970 765 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524(InterPro)
Cco11g1970 765 ProSitePatterns Calcium-binding EGF-like domain signature. 284 308 IPR018097 GO:0005509(InterPro)
Cco11g1970 765 Gene3D Laminin 287 327 - -
Cco11g1970 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g1970 765 FunFam Wall-associated receptor kinase 2 235 282 - -
Cco11g1970 765 CDD STKc_IRAK 415 678 - -
Cco11g1970 765 SUPERFAMILY Protein kinase-like (PK-like) 388 682 IPR011009 -
Cco11g1970 765 FunFam Wall-associated receptor kinase 2 485 703 - -
Cco11g1970 765 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1970 765 Gene3D Transferase(Phosphotransferase) domain 1 485 707 - -
Cco11g1970 765 FunFam Wall-associated receptor kinase 2 379 484 - -
Cco11g1970 765 ProSiteProfiles EGF-like domain profile. 284 317 IPR000742 -
Cco11g1970 765 Pfam Wall-associated kinase 156 232 IPR013695 GO:0004674(InterPro)|GO:0016020(InterPro)
Cco11g1970 765 Gene3D Laminin 235 286 - -
Cco11g1970 765 SUPERFAMILY EGF/Laminin 282 326 - -
Cco11g1970 765 Pfam Protein kinase domain 409 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1970 765 CDD EGF_CA 284 317 - -
Cco11g1970 765 Gene3D Phosphorylase Kinase; domain 1 383 484 - -
Cco11g1970 765 SMART serkin_6 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g1970 765 SMART egf_5 287 326 IPR000742 -
Cco11g1970 765 SMART egf_5 236 283 IPR000742 -
Cco11g1970 765 Pfam Wall-associated receptor kinase galacturonan-binding 25 82 IPR025287 GO:0030247(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1118 Cco-Chr3:20917580 Cco11g1970 Cco-Chr11:32175938 1.20E-90 dispersed
Cco08g0758 Cco-Chr8:19384463 Cco11g1970 Cco-Chr11:32175938 5.40E-188 dispersed
Cco08g0759 Cco-Chr8:19398422 Cco11g1970 Cco-Chr11:32175938 4.40E-176 dispersed
Cco08g0760 Cco-Chr8:19412329 Cco11g1970 Cco-Chr11:32175938 1.50E-62 dispersed
Cco11g0893 Cco-Chr11:11755436 Cco11g1970 Cco-Chr11:32175938 1.40E-118 dispersed
Cco11g1970 Cco-Chr11:32175938 Cco02g1474 Cco-Chr2:27248833 6.60E-56 dispersed
Cco11g1970 Cco-Chr11:32175938 Cco10g1945 Cco-Chr10:33008027 8.00E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87270 PF00069 Pkinase 1.70E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1970 - - - 0.0