Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1976 ATGGGGTCCGAGCAGAACAGATTCCCTCAGCAGGAACGGGAATTAATGTGGAGTACCAGGAAGTTCAAGTACAGGATTTGGATGTCTCCTGCTGTTAATGCTTTGAAAAGGGTGGCTGTTTATCTGTTGCTCAAGCTTCTTGGCCAGTATCCCAACCTACTTTCTCCTTTTAAGTTTCCTACCAAGGGAAAGAGATGGGGTGGATGTTGGGGTGCATTATCTTGTTTTCACTCTCAGAAAGGAGAAAAGCGCATCGTACCTGCATCTCGTTTACCTGAGGGCAATGCCGTGACAACCCAGCCTAATGGACCTCAAGCAGCAGGAATGACCAACCAGGCTACAGTGATAACTCCATCCCTTCTAGCCCCACCTTCTTCACCAGCCTCTTTTACAAATTCTGCACTCCCTTCAACAGTCCAATCACCTAGCTGTTTCATGTCACTGTCTGCAAACTCACCTGGAGGTCCTTCATCCACAATGTTTGCTACAGGGCCATATGCGCATGAAACACAGCTGGTTTCTCCTCCTGTTTTCTCAGCCTTCACCACTGAACCGTCAACTGCTCCCCTCACCCCCCCACCCGAACTAGCTCATCTAACCACGCCTTCTTCCCCTGATGTGCCCTTTGCTCAGTTCCTATCCTCATCGGTGGATCTCAAAGGAACTGGAAAGGCCAATTACATTGCTTCAAATGATCTTCAAGCAGCATATTCTCTCTACCCTGGAAGTCCTGCCAGTAGCCTTGTGTCACCAATTTCAAGGACCTCTGGCGATTGCTTATCATCCTCATTTCCTGAAAGGGACTTCCCATCACAGTGGAATCCTTCAACTTCTCTCCAAGATGGAAAATATCCAAGAAGTGGTTCTGGTCGGCTATTTGGAAATGAGAAAGCTGGTGGTACATCGTTGGCATCTCAGGATTCTAATTTCTTCTGCCCTGCTACATTTGCACAATTCTATCTGGACAATCCACCATTCCCTCATACTGGTGGAAGGTTAAGTGTATCGAAGGATTCAGATGTCTACTCTTCTAGTGGGAATGGATACCAGAACCGGCACAGTAAATCTCCAAAACAAGATGTGGAGGAAATAGAAGCTTACAGAGCATCGTTTGGTTTCAGTGCGGATGAAATTATAACTACTACACAGTATGTGGAGATATCTGATGTAATGGAGGATTCCTTTACTATGAGACCTTTTACCTCAACTAGTCTATCAGCAGAAGAAAGTATTGAACCTCCATTATTGGGTGAAAAACTAAAATCCACGCATACAACTTTACAGAGTCAGAGAAGTATTAAATCAGCACCTGAGGTTGTCGAAAAGGAAACCTGCACTGAAGTGCTGGCATTATGCAATGGTTATAAAGACAATAAATTGCAAAGACAACCTGGTAATATGTCAGGATCAAGTACTTCAAACCAAGTTGAAAAAGACGTATTCTCAAGGACAGGGTCATCCAAAAATAGTCGCAAGTATAATCTTGGCTTATCCTGCTCTGATGCAGAGGTTGACTACGGAAGGGGAAGGAGCCCAAGGGAGGCCAGGGAAGATTTTTCATGGCATGACTAA 1572 45.17 MGSEQNRFPQQERELMWSTRKFKYRIWMSPAVNALKRVAVYLLLKLLGQYPNLLSPFKFPTKGKRWGGCWGALSCFHSQKGEKRIVPASRLPEGNAVTTQPNGPQAAGMTNQATVITPSLLAPPSSPASFTNSALPSTVQSPSCFMSLSANSPGGPSSTMFATGPYAHETQLVSPPVFSAFTTEPSTAPLTPPPELAHLTTPSSPDVPFAQFLSSSVDLKGTGKANYIASNDLQAAYSLYPGSPASSLVSPISRTSGDCLSSSFPERDFPSQWNPSTSLQDGKYPRSGSGRLFGNEKAGGTSLASQDSNFFCPATFAQFYLDNPPFPHTGGRLSVSKDSDVYSSSGNGYQNRHSKSPKQDVEEIEAYRASFGFSADEIITTTQYVEISDVMEDSFTMRPFTSTSLSAEESIEPPLLGEKLKSTHTTLQSQRSIKSAPEVVEKETCTEVLALCNGYKDNKLQRQPGNMSGSSTSNQVEKDVFSRTGSSKNSRKYNLGLSCSDAEVDYGRGRSPREAREDFSWHD 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32213105 32221485 - CcPI632755_11g019760.1 Cco11g1976 193212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1976 523 MobiDBLite consensus disorder prediction 459 523 - -
Cco11g1976 523 MobiDBLite consensus disorder prediction 459 496 - -
Cco11g1976 523 MobiDBLite consensus disorder prediction 336 354 - -
Cco11g1976 523 MobiDBLite consensus disorder prediction 260 284 - -
Cco11g1976 523 MobiDBLite consensus disorder prediction 260 300 - -
Cco11g1976 523 MobiDBLite consensus disorder prediction 506 523 - -
Cco11g1976 523 MobiDBLite consensus disorder prediction 331 360 - -
Cco11g1976 523 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 62 522 IPR040420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1976 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0864 Cco-Chr7:20017618 Cco11g1976 Cco-Chr11:32213105 6.40E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g8 . Blo12g00834 . Bda03g00341 Bpe02g00279 Bpe04g00301 Bma04g00310 Bma01g02434 . . . Cma09g00001 . . . . . . . . . . . . . . . . . . . Cone4ag2039 Cone7ag1952 . . . Csa04g02755 . . . . . . . . . . . . Cmo09g00001 . . . Car09g00001 . Cpe02g00001 . . . . . . . Cla11g01866 Cam11g1936 Cec11g1962 Cco11g1976 Clacu11g2101 Cmu11g1903 . . . Chy07g00442 Cme07g00007