Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0007 ATGCTGCCTTCCTTTCTTCTCAGCCCTCCGATTTCTGGCGAGGAAGCAAAAGGATGTGATTTCCAGCCACCGTTTTCTTCTTCTTCTTCTTCTTCTTCATTCTCACCATTCTCCCTTTCCTACTCCTTCCCCTTCTTCTTCGTTTCTGATTACACCTTCGACTGTGAAATGGGCGAGGCCGTGGTCGTCAGCTCTGAGGATGTGGATGTGGATGTTGATTATGTCAGGCTCCACCACAACGACGATATGGCGGACGCAGAGAGTATGGGCACTCACAGACCTAACAGAGATGCCATTTCGACTGGGTTTGGGGTCGGGATTAAGTGGGAGCGCTTCTTGCCCAAGATGATGCTCAGGGTTTTGCTCGTCGAAGCCGACGATTCCACCAGACAGATTATCACTGCCCTTCTCCGCAAGTGCTGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAGATTCTCAAAGAAAGGCCCCGTAATGTAGATCTTATATTGGCGGAAGTTGAATTGCCATCAATCTCTGGATTTGCTCTGCTAACTCTGATCATGGAGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCCTCCGAAGATTCTATCAGCACTGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAGAAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCGTCCAATGTGAGAACTGACGTTCAAGAAAAGGTTGAAGTCACTTCTGAAAATGAGACTGCAAGCAATCACTCAACTGGTTGTGCTGCTGGAGTTCAGAGGAATAACAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCTTGTACGAAGGTAGATTTTGAGGCTGGAAGTAAGATGCAGGAAAATTCACAGCCTAGGCAGGGAAAAGCCTCTCCCAACGACTTCAAGCTACAAAAAGATGAACATCACATCAATTTGAGTCAAAGATTGTTTATGCATGAAAACGAAACTGGAGGATTGGCAATGAGTTGCTATGTCAATACTGATTTACCAATCACACTAAGCATGGGTCTTGAGCCGATCAATGATGGGAGAAATCCTAATATTGCTAGTGAAGTAGGTGATGATAAGGATTTGCTTGCCAACCCATCCAGAGATACAACTGCCTTGGATCATACCTGTATCAAGTATCCCGATAACTACCAAAAAAGTTCTCCTTCCCACAATTTTGCTGCAAATAATTTCGGCTCTGCTCTTCATTTGGATCTTTCTCTGAGAAGATGTCAACCTAACGATTTTGAGGAACGTGCTACGGGACGGGCAACCCTCAAACATTCTAGTGCTTCAGCTTTTACAAGATACACTTTCAGGCCATTGCAATCACTTCAAGCAAAATCAAGCAGTATCTGTGATGAGCAAAAAGAATTTGGAATTAACCCCGAGCATATTGGAAGTATTGCTGCTACTTCTACCTCTGATGCCATTATTAATCCTACGCCAAATCTGCAAAAGAGTAATACTTCTATGCCTATGATCACGAGTCAATCTACTCATTCTGAAGTTGCTAAATCAAGTACTTCAGAGACGGTAATCCCTCTTCAAGTTTCAGTGAAAGATTTGATGTCTAATAATCGACACTCAGGCTCAGGCTATAGCTCTTTACCTCCTCACAACTTCTGCACACAACGTGGTAGCCCATCGTCTCCATGCCGAAGTTCAGCCACCCATCCAGAACTCATCTTTGGGAAACAGACGGTTTATCACTCAAACTTTGAGAATCATAATTTGGAGCAATTTCGGAACCAGCATCACAACGTAAGCAGTCCAGCAAGCAGAAAGATAGAAAACTCGGGCCAGTCTGCAGAAAATCAAGGCCATATATCACCTACCACTGATCACAGTGCAAACAGTAATGCATGTTGTGGCAATACAACTCATGTTGGAAGTGTGGGATATCCTAGCACCTGCGGAAGCAACAGCAATTTAGATCGGACTGGGGTTGCAAGAGTTACAGCTGAGAGCAGAAATGAAGAAGCTTTGTTTTCTCAAGGAGGAGATTCTCACCGGTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAAAGAAAAGATAGATGTTATGAGAAAAAGGTCCGTTATGAGAGTAGAAAAAAGCTGGCAGAGCAGCGTCCTAGAGTGAAGGGACAGTTTGTCCGTAGAGTATGTACTGATCCATTGCCTGCAGAAACCAACGACAATACATCCAACGTTTAG 2265 44.11 MLPSFLLSPPISGEEAKGCDFQPPFSSSSSSSSFSPFSLSYSFPFFFVSDYTFDCEMGEAVVVSSEDVDVDVDYVRLHHNDDMADAESMGTHRPNRDAISTGFGVGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSISGFALLTLIMEHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQASSNVRTDVQEKVEVTSENETASNHSTGCAAGVQRNNKNIEKGSDTQSSCTKVDFEAGSKMQENSQPRQGKASPNDFKLQKDEHHINLSQRLFMHENETGGLAMSCYVNTDLPITLSMGLEPINDGRNPNIASEVGDDKDLLANPSRDTTALDHTCIKYPDNYQKSSPSHNFAANNFGSALHLDLSLRRCQPNDFEERATGRATLKHSSASAFTRYTFRPLQSLQAKSSSICDEQKEFGINPEHIGSIAATSTSDAIINPTPNLQKSNTSMPMITSQSTHSEVAKSSTSETVIPLQVSVKDLMSNNRHSGSGYSSLPPHNFCTQRGSPSSPCRSSATHPELIFGKQTVYHSNFENHNLEQFRNQHHNVSSPASRKIENSGQSAENQGHISPTTDHSANSNACCGNTTHVGSVGYPSTCGSNSNLDRTGVARVTAESRNEEALFSQGGDSHRSSQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRRVCTDPLPAETNDNTSNV 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83529 88294 - CePI673135_01g000070.1 Cec01g0007 193224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0007 754 Pfam CCT motif 695 737 IPR010402 GO:0005515(InterPro)
Cec01g0007 754 Gene3D - 116 306 - -
Cec01g0007 754 PANTHER TWO-COMPONENT RESPONSE REGULATOR 111 329 IPR045279 GO:0009736(InterPro)
Cec01g0007 754 Pfam Response regulator receiver domain 120 231 IPR001789 GO:0000160(InterPro)
Cec01g0007 754 MobiDBLite consensus disorder prediction 605 637 - -
Cec01g0007 754 SUPERFAMILY CheY-like 112 243 IPR011006 -
Cec01g0007 754 MobiDBLite consensus disorder prediction 247 318 - -
Cec01g0007 754 MobiDBLite consensus disorder prediction 247 313 - -
Cec01g0007 754 ProSiteProfiles CCT domain profile. 695 737 IPR010402 GO:0005515(InterPro)
Cec01g0007 754 ProSiteProfiles Response regulatory domain profile. 119 237 IPR001789 GO:0000160(InterPro)
Cec01g0007 754 SMART REC_2 118 233 IPR001789 GO:0000160(InterPro)
Cec01g0007 754 MobiDBLite consensus disorder prediction 548 576 - -
Cec01g0007 754 CDD psREC_PRR 120 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0007 Cec-Chr1:83529 Cec04g1013 Cec-Chr4:29723345 1.80E-42 dispersed
Cec01g0007 Cec-Chr1:83529 Cec06g1400 Cec-Chr6:27465332 1.40E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28816 PF00072 Response_reg 7.90E-21 CL0304 Cec TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0007 K12130 - csv:101209788 1235.32