Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0009 ATGCTGTTAAGAGAGCTGAGTAAGATGAGTAGTCGATTTTCTCGTACAATATATGTTGGAAACTTGCCCTCAGACATAAAGGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCGATCCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCGTCTAGTGATCGTCGTAGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTAAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGGACGTTTGGGATTGTTGATTATACTAACTATGATGACATGAAATATGCTATGCGAAAACTAGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTATGACGGAAGTCCCACCAGGAACAGGAGCAGGAGCAGGAGCAGAAGCCGTAGTAGGAGCCGGAGCCGGAGCCGGAGCCGGAGCCGGAGCCGAAGTCGTAGCCGTAGCCGTAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCTGAACGATCTGTTTCGAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTTAAATCTACAAGGCCACGGTCAAAATCAAGATCTGGGTCACCACGTCAGGCACGAGAAGGAAGTGAATGA 825 46.06 MLLRELSKMSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRRRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRNRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 96605 102063 - CePI673135_01g000090.1 Cec01g0009 193226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0009 274 MobiDBLite consensus disorder prediction 196 228 - -
Cec01g0009 274 SMART rrm1_1 16 86 IPR000504 GO:0003723(InterPro)
Cec01g0009 274 SMART rrm1_1 112 181 IPR000504 GO:0003723(InterPro)
Cec01g0009 274 MobiDBLite consensus disorder prediction 241 263 - -
Cec01g0009 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 90 IPR000504 GO:0003723(InterPro)
Cec01g0009 274 Gene3D - 4 111 IPR012677 -
Cec01g0009 274 MobiDBLite consensus disorder prediction 188 274 - -
Cec01g0009 274 Pfam RNA recognition motif 17 84 IPR000504 GO:0003723(InterPro)
Cec01g0009 274 Pfam RNA recognition motif 113 175 IPR000504 GO:0003723(InterPro)
Cec01g0009 274 Gene3D - 112 188 IPR012677 -
Cec01g0009 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723(InterPro)
Cec01g0009 274 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Cec01g0009 274 SUPERFAMILY RNA-binding domain, RBD 14 181 IPR035979 GO:0003676(InterPro)
Cec01g0009 274 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 12 208 IPR050374 GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0009 K12890 - - csv:101210036 372.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0009 Cec-Chr1:96605 Cec09g0566 Cec-Chr9:4875880 6.90E-77 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g971 . . Bda05g00142 . . . Bma10g01319 . . . . . Car02g00950 . . Cpe05g00577 . . . . . . . . Cla01g00010 Cam01g0010 Cec01g0009 Cco01g0011 Clacu01g0011 Cmu01g0011 Cre09g2494 Cone1ag1018 . . . . Csa05g00007 Chy09g01474 . Blo07g00317 . . . . . . . . Cmo02g01181 Cmo15g01056 . . . . . Cpe13g00338 Bhi12g00700 . . . . . . . . . . . . . . . . Cme09g02022
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000386 3 9 3 2 2 3 5 3 3 3 2 3 3 3 4 5 3 7 5 3 3 3 4 3 3 2 3 22 7 3 127