Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0020 ATGCCATCGGATCCGAACAAGACGTTCCCTCTTCACCTTTTTTCAATCTTGATAAATGGCTTCGGATCCGAAGATTGCTGGCTTGTAATCTCTGGAAAGGTTTATGATGTAACTCCTTTCATGGAGGATCACCCCGGAGGTGATGAAGTATTATTGTCAGCAACTGGAAAAGATGCTACGAACGATTTCGAAGATGTTGGGCACAGCGATTCAGCAAGAGAAATGATGGACAAATATTACATTGGAGAAATTGATCCTTCAACAGTTCCTTTGAAGAAGATTTACATTCCATCACAACAAACGCAGCATAACCCAGATAAGACACCCGAGTTTGTGATTAAGATCTTGCAGTTTTTGGTTCCCATATTGATTTTGGGTTTGGCGTTTGCTGTTCGACACTACACCAAGAATGAATAA 417 41.01 MPSDPNKTFPLHLFSILINGFGSEDCWLVISGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLKKIYIPSQQTQHNPDKTPEFVIKILQFLVPILILGLAFAVRHYTKNE 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 162483 164457 - CePI673135_01g000200.1 Cec01g0020 193237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0020 138 PANTHER CYTOCHROME B5 23 136 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cec01g0020 138 Pfam Cytochrome b5-like Heme/Steroid binding domain 22 84 IPR001199 -
Cec01g0020 138 SMART Cyt_b5_2 9 85 IPR001199 -
Cec01g0020 138 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 40 47 IPR018506 GO:0020037(InterPro)
Cec01g0020 138 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 24 85 IPR001199 -
Cec01g0020 138 FunFam Cytochrome b5 type B 19 89 - -
Cec01g0020 138 Gene3D - 19 90 IPR036400 -
Cec01g0020 138 PRINTS Cytochrome B5 signature 44 58 IPR001199 -
Cec01g0020 138 PRINTS Cytochrome B5 signature 34 44 IPR001199 -
Cec01g0020 138 PRINTS Cytochrome B5 signature 72 84 IPR001199 -
Cec01g0020 138 PRINTS Cytochrome B5 signature 59 66 IPR001199 -
Cec01g0020 138 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 22 91 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0020 K23490 - - csv:101207109 241.506
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0020 Cec-Chr1:162483 Cec05g0388 Cec-Chr5:3177022 1.90E-46 dispersed
Cec01g0020 Cec-Chr1:162483 Cec05g0063 Cec-Chr5:665533 8.40E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g991 . . . Bda07g01952 . . . Bma14g02023 . . Cma02g01139 Cma15g01010 Car02g00943 Car15g00942 . Cpe05g00584 . . . . . . . . Cla01g00023 Cam01g0022 Cec01g0020 Cco01g0024 Clacu01g0023 Cmu01g0022 Cre09g2485 Cone1ag1008 Cone5ag0716 . . . Csa05g00025 Chy09g01458 . . Blo09g00007 . . . . . . . Cmo02g01170 Cmo15g01073 . . . . . Cpe13g00327 Bhi12g00682 . . . Hepe06g0817 . . . . . . . . . Lsi09g00003 . . Cme09g02007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0388 . 1 133 NADPH P450 reductases AT5G53560 67.7 3.2e-51 198.0
Cec01g0020 . 23 138 NADPH P450 reductases AT5G53560 77.6 2.1e-50 195.3
Cec06g0806 . 1 133 NADPH P450 reductases AT5G53560 63.2 5.3e-46 180.6
Cec05g0388 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.7e-47 185.7
Cec06g0806 . 1 133 NADPH P450 reductases AT5G48810 59.3 1.0e-44 176.4
Cec01g0020 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.0e-40 162.2
Cec05g0388 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cec06g0806 . 22 133 NADPH P450 reductases AT2G32720 76.8 2.6e-45 178.3
Cec01g0020 . 18 137 NADPH P450 reductases AT2G32720 64.2 3.3e-40 161.4
Cec04g0619 . 2 281 NADPH P450 reductases AT5G17770 81.1 3.3e-130 461.5
Cec10g1687 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cec02g2546 . 244 516 NADPH P450 reductases AT5G17770 72.9 2.1e-116 415.6
Cec05g0388 . 1 133 NADPH P450 reductases AT5G53560 67.7 3.2e-51 198.0
Cec01g0020 . 23 138 NADPH P450 reductases AT5G53560 77.6 2.1e-50 195.3
Cec06g0806 . 1 133 NADPH P450 reductases AT5G53560 63.2 5.3e-46 180.6
Cec05g0388 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.7e-47 185.7
Cec06g0806 . 1 133 NADPH P450 reductases AT5G48810 59.3 1.0e-44 176.4
Cec01g0020 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.0e-40 162.2
Cec05g0388 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cec06g0806 . 22 133 NADPH P450 reductases AT2G32720 76.8 2.6e-45 178.3
Cec01g0020 . 18 137 NADPH P450 reductases AT2G32720 64.2 3.3e-40 161.4
Cec04g0619 . 2 281 NADPH P450 reductases AT5G17770 81.1 3.3e-130 461.5
Cec10g1687 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cec02g2546 . 244 516 NADPH P450 reductases AT5G17770 72.9 2.1e-116 415.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156