Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0049 ATGACTTATCTGAAGGAGAAGATTGTGAGGTTTCAGGACTGGAGTTCAGATAAAACTTCAAGGGGGTTATATTCTGCAGACAACACTTTAAATACTGGAAAGAATGGGACAAGAGCTGACTTAGTTTCAGAGAAGCCTCACAAAGAATTGGAAACTGGTTCTTACAGGATTAATAGAATTAAGAAATCCTTGAAATCATCTTCTTTCAATAAATTTATGTCCAGAGGTCTTGGAACTGGAAAAAAAGTGCTTGACCCACAGGGTCCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCTTGTGTGATTGCAGTCTCGTTGGATCCTTTGTTCTTTTATGTCCCTGTGATTGATGACGATAAGAAATGTCTTGGGTTGGATCAGAAGATGGAGATTACAGCTAGTGTGTTACGTTCATTCACTGATATATTTTATATATTACATATTGTTTTTCAATTTCGTACGGGATTTATCGCCCCCTCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGAAATAGCAAAGAGATATATCTCATCATACTTTTTGATCGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATTCTGATAGTTATTCCAAACATGAAAGGCTCAAGGTCGTTGAATACCAAGGACTTGCTGAAATTTGTTGTTTTCTTCCAGTATGTGCCACGGTTTATCAGAATCTATCCATTATATAGAGAAGTTACAAGAACATCTGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTGGCAAGTCATGTCTTTGGCGCGTTCTGGTACTTGTTCTCTATAGAACGAGAAACTACATGTTGGCGGAGGGCTTGTCATAATCGTACTGGCTGTGTTTCTAATTCACTATATTGTGATGTCAGTCCAGGAGACAACTCATTTTTAAATATTTCATGTCCTCTAGTTGATGACAATCCTCCTTTTGATTTTGGAATATTTCTTGATGCTCTTGAATCTGGTGTTGTGGGGTCGATGAATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCATTTACGTGTGGGAAATTTGCTTTGCTGTTTTCATCTCCATTTCTGGCTTGGTTCTGTTTTCATTTCTCATCGGGAACATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTCTGCTCCCTGAAAGCCTCCGAGAGCGAATCAGGAGGTATGAGCAGTACAAGTGGCAGGAAACCAGAGGTGTTGATGAAGAGAATCTGATTCGAAATCTTCCAAAAGATCTCAGAAGGGATATTAAACGCCATCTTTGCTTGTCTTTGCTAATGAGGGTACCCATGTTTGAAAAAATGGATGAACAATTGTTGGATGCAATGTGTGACCGTCTCAAGCCAGTACTATACACGGAGGAAAGTTTCATTGTTAGGGAAGGAGACCCGGTAGACGAGATGATTTTTATTATGCGAGGCAAGTTATTGTCTGTAACTACGAATGGGGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCGGGTGATTTCTGTGGAGAAGAGTTACTGACATGGGCTTTGGATCCACACTCCTCATCCAATCTGCCAATTTCAACGAGAACTGTTCGAACACTTTCAGAAGTTGAAGCATTTGCTTTGAAGGCTGATGACTTAAAGTTTGTAGCCTCACAGTTCCGAAGGCTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCGCAGCAATGGAGAACATGGGCAGCATGTTTTATTCAAGCAGCATGGCGTCGATACCGCAGAAAGAAGCATGAGCAGACCCTCTTGGAAGAAGAGAACAGGTTAAAGGATGCATTGGCCAAGACAGGTGGCAGTTCTCCAAGTTTAGGTGCCACTATCTATGCATCCAGATTTGCAGCTAACATCCTTAGAACGGTTCGACGGACAAGCTCACGGAAGGCCAGGATTCCAGAGAGAATACCACCGATGTTGCTTCAGAAACCAGCAGAACCTGATTTTACCTCTGAAGAGAATAGTTGA 2136 41.67 MTYLKEKIVRFQDWSSDKTSRGLYSADNTLNTGKNGTRADLVSEKPHKELETGSYRINRIKKSLKSSSFNKFMSRGLGTGKKVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVIDDDKKCLGLDQKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVEDAWEIAKRYISSYFLIDILAVLPLPQVVILIVIPNMKGSRSLNTKDLLKFVVFFQYVPRFIRIYPLYREVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWRRACHNRTGCVSNSLYCDVSPGDNSFLNISCPLVDDNPPFDFGIFLDALESGVVGSMNFPQKFFYCFWWGLRNLSSLGQNLQTSIYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLIRNLPKDLRRDIKRHLCLSLLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESFIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKKHEQTLLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTVRRTSSRKARIPERIPPMLLQKPAEPDFTSEENS 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 410925 417142 - CePI673135_01g000490.1 Cec01g0049 193266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0049 711 Coils Coil 633 653 - -
Cec01g0049 711 Pfam Cyclic nucleotide-binding domain 502 593 IPR000595 -
Cec01g0049 711 Gene3D - 96 405 - -
Cec01g0049 711 Gene3D Jelly Rolls 479 599 IPR014710 -
Cec01g0049 711 FunFam Cyclic nucleotide-gated ion channel 1 479 597 - -
Cec01g0049 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 32 699 - -
Cec01g0049 711 Gene3D Helix hairpin bin 407 472 - -
Cec01g0049 711 ProSiteProfiles cAMP/cGMP binding motif profile. 481 565 IPR000595 -
Cec01g0049 711 Pfam Ion transport protein 96 408 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g0049 711 SUPERFAMILY cAMP-binding domain-like 410 603 IPR018490 -
Cec01g0049 711 CDD CAP_ED 481 612 IPR000595 -
Cec01g0049 711 SMART cnmp_10 481 612 IPR000595 -
Cec01g0049 711 FunFam Cyclic nucleotide-gated ion channel 1 408 472 - -
Cec01g0049 711 SUPERFAMILY Voltage-gated potassium channels 85 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0049 Cec-Chr1:410925 Cec02g2234 Cec-Chr2:39774418 4.70E-186 dispersed
Cec01g1809 Cec-Chr1:32507864 Cec01g0049 Cec-Chr1:410925 1.20E-106 transposed
Cec02g1530 Cec-Chr2:32897767 Cec01g0049 Cec-Chr1:410925 1.20E-208 transposed
Cec10g1481 Cec-Chr10:29194528 Cec01g0049 Cec-Chr1:410925 4.80E-209 transposed
Cec01g0049 Cec-Chr1:410925 Cec05g0103 Cec-Chr5:919821 2.20E-191 wgd
Cec01g0049 Cec-Chr1:410925 Cec05g1049 Cec-Chr5:9204755 1.10E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0049 K05391 - csv:101221781 1361.28