Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0106 ATGTGGTTATTCAGAAGGAAAGGACCCTCTGGATTTTCGTCTTCTTCCACTGCCGAGGAAGTTACCGACGGGATCGATGGCACTGGTCTTACCGCCATTGTTACAGGAGCATCAAGTGGTATTGGCTCGGAAACTGCACGTGTTCTTGCATTACGTGGAGTCCATGTCATTATGGGTGTTAGGAATTTAGAAGCTGGTAGAAATGTCAGAGAAACCATTGTCAAGGAGAACCCCTCTGCAAAAATTGATGCTATGGAGTTGGATCTTAGCTCCACGGCATCTGTAAGAAAATTTGCCTCAGATTACAAGTCGTCTGGGTTTCCACTTAACATCCTCATTAACAATGCAGGAATAATGGCTACCCCTTTTGGACTTTCAAAAGATAACATAGAGCTGCAATTTGCAACAAACCACTTGGGCCATTTCCTTTTGACAAATCTACTTTTGGAAAATATAAAGAAAACTGCCGCTGAAAGTAAGAAAGAAGGAAGAATTGTAAATGTCTCCTCGGAAGCTCATCGTTACTCATATCCTGAAGGCATTCGATTCGATGGAATTAATGATGAATCAAGGTATAATAAAATGCAGGCTTATGGCCAGTCGAAGTTATCTAGTGTTTTGCATGCCAATGAACTTACAAGACGTTTCAAGGAAGAAGGATTAAACATAACTGCAAACTCACTCCACCCGGGGATAATCACCACAAATCTTTTTCGCCATTTCAATTATGGCAAGGGTATAGTAAACACCGTTGGCAAACTCATGTTTAAAAATGTTCAACAGGGTGCGGCAACAACCTGCTATGTGGCATTGCATCCACAAGTAAAGGGAGTGAGTGGTGAATATTTTCAGGATAAGTATTACATGGTAAATAAGGAAGTGGATTTAGAGCCACTATCCTCAGAGATGAAGATAGAAGAAAGAGGAATGTGGTTTCTTAGCAGGAAAGGACCATCTGGGTTTTCAGCTTCTTCCACAGCTGAAGAAGTTACAGAAGGAATCGATGGGTCAGGTCTCACAGCCATTGTTACAGGTGCATCAAGTGGCATTGGTACTGAAACTGCTCGTGTTCTTGCATTGCGCGGAGTACATGTAGTAATGGCGGTTAGAAATGTAGCAACTGGTAGGGAGGTCCAAGAAGCCATTGTCAAGGAAAACCCAACTGCCAAAGTTGATACCATGGAGTTGGACCTGAGCTCAATGGCATCTGTTCAGAATTTTGCATCAAATTTCAAATCCTCAGGTCTTCCACTGAACATTCTCGTGAATAATGCAGGAGTCATGGCTTCTCCCTTCTTACTCTCGAAGGACAAGATAGAATTGCAGTTTGCAACAAACCATGTGGGACATTTTCTTTTGACAAATCTATTGTTGGAGACATTGAAAAAGACAGCAAAAGAAAGTAACAAAGAAGGAAGGATTGTCAATGTCTCGTCACGGCGGCACCAATTTTTGTATCGTGAAGGCATCCGATTTGACAAAATCAATGATCGACCAAGCTATAATGGTCTTTCTGCATATGGTCAATCAAAGCTTGCTAATATTTTGCATGCTTCCGAACTTGCAAGAAAGCTCAAGGAAGAAGGGGTGAAGATAACTGCAAATTCACTACATCCTGGAGCCATTCCTACAAACCTATTTCGTTATCATAGCATCATCAACGGTTTTCTTGGCGTTTTGGGTAAACATGTCATGAAGAATGTACAACAGGGAGCAGCGACGACATGCTATGTTGCATTACATCCACAAATCAAAGGGATCAGCGGCCAGTATTTTGCTGACAGTAACATAGCTAAAGCAAGTTCACAAGCGAATGATAGTGAATTGGCAAAGAAACTGTGGGACTTCACCCAAAAGTTGATATCTAGTGGTTTAGAAATTCCTTAA 1887 41.65 MWLFRRKGPSGFSSSSTAEEVTDGIDGTGLTAIVTGASSGIGSETARVLALRGVHVIMGVRNLEAGRNVRETIVKENPSAKIDAMELDLSSTASVRKFASDYKSSGFPLNILINNAGIMATPFGLSKDNIELQFATNHLGHFLLTNLLLENIKKTAAESKKEGRIVNVSSEAHRYSYPEGIRFDGINDESRYNKMQAYGQSKLSSVLHANELTRRFKEEGLNITANSLHPGIITTNLFRHFNYGKGIVNTVGKLMFKNVQQGAATTCYVALHPQVKGVSGEYFQDKYYMVNKEVDLEPLSSEMKIEERGMWFLSRKGPSGFSASSTAEEVTEGIDGSGLTAIVTGASSGIGTETARVLALRGVHVVMAVRNVATGREVQEAIVKENPTAKVDTMELDLSSMASVQNFASNFKSSGLPLNILVNNAGVMASPFLLSKDKIELQFATNHVGHFLLTNLLLETLKKTAKESNKEGRIVNVSSRRHQFLYREGIRFDKINDRPSYNGLSAYGQSKLANILHASELARKLKEEGVKITANSLHPGAIPTNLFRYHSIINGFLGVLGKHVMKNVQQGAATTCYVALHPQIKGISGQYFADSNIAKASSQANDSELAKKLWDFTQKLISSGLEIP 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 914713 926249 + CePI673135_01g001060.1 Cec01g0106 193323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0106 628 MobiDBLite consensus disorder prediction 1 21 - -
Cec01g0106 628 Gene3D - 332 625 - -
Cec01g0106 628 Gene3D - 22 316 - -
Cec01g0106 628 CDD retinol-DH_like_SDR_c_like 338 614 - -
Cec01g0106 628 PRINTS Glucose/ribitol dehydrogenase family signature 466 482 IPR002347 -
Cec01g0106 628 PRINTS Glucose/ribitol dehydrogenase family signature 530 547 IPR002347 -
Cec01g0106 628 PRINTS Glucose/ribitol dehydrogenase family signature 340 357 IPR002347 -
Cec01g0106 628 PRINTS Glucose/ribitol dehydrogenase family signature 507 526 IPR002347 -
Cec01g0106 628 PRINTS Glucose/ribitol dehydrogenase family signature 416 427 IPR002347 -
Cec01g0106 628 CDD retinol-DH_like_SDR_c_like 29 285 - -
Cec01g0106 628 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 287 IPR036291 -
Cec01g0106 628 PANTHER RETINOL DEHYDROGENASE 318 621 - -
Cec01g0106 628 Pfam short chain dehydrogenase 340 480 IPR002347 -
Cec01g0106 628 Pfam short chain dehydrogenase 31 180 IPR002347 -
Cec01g0106 628 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 338 597 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0106 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0106 Cec-Chr1:914713 Cec06g1918 Cec-Chr6:32544332 1.20E-76 dispersed
Cec02g1829 Cec-Chr2:36127142 Cec01g0106 Cec-Chr1:914713 8.90E-25 transposed
Cec03g1479 Cec-Chr3:32848087 Cec01g0106 Cec-Chr1:914713 8.00E-11 transposed
Cec10g2103 Cec-Chr10:35677236 Cec01g0106 Cec-Chr1:914713 4.40E-99 transposed
Cec11g1863 Cec-Chr11:32813063 Cec01g0106 Cec-Chr1:914713 1.20E-23 transposed
Cec01g0106 Cec-Chr1:914713 Cec07g0886 Cec-Chr7:21891767 9.00E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g310 Blo02g01124 Blo03g00227 . Bda08g00502 Bpe05g00662 . . . . Cmo16g00644 . Cma15g01280 . Car15g01154 . Cpe14g00505 . . . . . . . . Cla07g00772 Cam07g0831 Cec07g0886 Cco07g0863 Clacu07g0808 Cmu07g0814 Cre07g1168 Cone8ag0615 . . Cone9ag0789 . Csa05g00120 Chy09g01373 Cme07g01630 . . . . . . Bma05g00836 . . . . . . . . . . Bhi12g00031 . . Lac11g0044 . . Lcy12g0041 Cla01g00106 Cam01g0105 Cec01g0106 Cco01g0107 Clacu01g0103 Cmu01g0104 Cre09g2402 Lsi09g00092 Csa04g00593 . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126