Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0116 ATGTCGCAATTCGATTGCATACACGTGGACGCCCCAAAACGGAGCCAAACTCTTGATGCCTCTCTCACTCGAAAGGTGGGAGCAGAATTTGTGGGCACATTCATTCTCATATTTGCTGCAACAGCCGCACCCATCGTCAACCAAAAGTACAACTCCGTCATGTCACTTATCGGAAACGCTGCATGCGGCGGCCTAGCGGCAATGGTCGTAATTCTGTCCACGGGACACATATCTGGCGGCCACCTAAACCCGTCACTAACCATCGCCTTGGCCGCCGTCCGCCACTTCCGTTGGGCCCATGTCCCCGCCTACATCATCGCCCAGGTCTCCGCTTCCATCTGCGCCTCCTTCGCTCTTAAAGGCGTTTTTCACCCTTTTATGTCTGGCGGCGTCACCGTCCCCTCCGTTGGCACTGCCCAGGCCTTTGCTCTCGAATTCCTCATCACTTTCAATCTCTTGTTCGTCGTCACCGCTCTCTCTACTGATACTCGAGCCGTTGGAGAGTTGGGCGGAATTGCAGTTGGAGCAACGGTGGTGCTCAACATTCTTATCGCTGGGCCATCCACCGGTGGTTCGATGAACCCAGTGAGGACTCTAGGCCCTGCCGTGGCTGCCGGAAATTATAAAGAACTGTGGGTGTACATGGTGGCTCCTACACTTGGGGCGATCGTTGGCGCTGCAACCTACACCGCCGTGAAGCACAAAGATGATGAAATGGATCATGTTCCGCCGCATGCGAGGAGCTTCCGTCGATGA 756 55.29 MSQFDCIHVDAPKRSQTLDASLTRKVGAEFVGTFILIFAATAAPIVNQKYNSVMSLIGNAACGGLAAMVVILSTGHISGGHLNPSLTIALAAVRHFRWAHVPAYIIAQVSASICASFALKGVFHPFMSGGVTVPSVGTAQAFALEFLITFNLLFVVTALSTDTRAVGELGGIAVGATVVLNILIAGPSTGGSMNPVRTLGPAVAAGNYKELWVYMVAPTLGAIVGAATYTAVKHKDDEMDHVPPHARSFRR 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 998441 1001989 + CePI673135_01g001160.1 Cec01g0116 193333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0116 251 Pfam Major intrinsic protein 21 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g0116 251 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cec01g0116 251 PANTHER AQUAPORIN NIP2-1 17 236 IPR034294 -
Cec01g0116 251 FunFam Aquaporin NIP2-1 14 243 - -
Cec01g0116 251 Gene3D Glycerol uptake facilitator protein. 5 241 IPR023271 -
Cec01g0116 251 PRINTS Major intrinsic protein family signature 212 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g0116 251 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g0116 251 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g0116 251 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g0116 251 PRINTS Major intrinsic protein family signature 24 43 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g0116 251 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g0116 251 SUPERFAMILY Aquaporin-like 20 238 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0116 Cec-Chr1:998441 Cec07g1329 Cec-Chr7:28889350 1.40E-79 dispersed
Cec01g0115 Cec-Chr1:990403 Cec01g0116 Cec-Chr1:998441 3.80E-105 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0116 K09874 - csv:101212485 421.779