Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0117 ATGGGTTTGCTCAAATTCTTTAGAGTTAAGAGAAAATCCAAAGTTGCTGATAAAAAAACCGTTCTTGATGCTCAATTTGAAGAGGGTTTTTTCGCTACAAGGTTTCGCTGGACTGAGATCGAGGCTTTCACTAAGAATTTCTCCGCTCTTGTCGGCTCCGGCGGCTTCAGCAACGTTTATCTTGCTCGGACGGCGCCGGGGATGGCGGCCGCCGTCAAGATTTTGGGCGCTAGTGAGCGGCTCAACCGGATGTTCCGCCAGGAATTGGACATTCTTCTCCAGCTCCGTCACCGGAATATTGTCAATTTCGTTGGGTATTGCGATGAACGAGATGAAGGAGCCTTGGTATTCGAATATGTCCCAAATGGGAACTTACAAGAAAAGCTCCACAACCGGGCGGCGGCCACGAAGACGGCGGTTCTTCCATGGAAACTCCGGCTACTCATAGCCTTTCAATTAGCTCAAGCAATCGAATACCTCCATGAGAAATGCAGCTTACAAATCGTTCACGGCGATATAAAATCATCGAACATTTTACTGGACGAACGATTCAATTGCAAATTATGCGATTTCGGGTCAGCAAAAATGGGGTTTTCGTCGTCGGTGGGGAATCCATCCTCGTCGCCGTCGAAGTCGAGCCCCTTCAGAGCGAAGCAATTGATGATGGGATCTCCAGGATACACAGATCCCCAATATCTAAGAACCGGAATCGCTTCAAAGAAAAACGATATTTACAGTTTCGGCGTTGTTCTCTTAGAGCTGATCACCGGAAAAGAGGCTTTCTGTTTGGAGAAAGGTCAGATTCTGACATCAATTTTACCTCCGGCGGTTCGCGATGGCGGAGGAATTAAACCGTCGGAAGTGGCGGAACTAGTCGATCCGCGACTCCGGGGCGATTACGACGGCAATGAAGCCGGTGCGTTGATTTCAATTGCGTCGGCGTGCGTGACGCAACCGCCGGCGCCGAGGCCGACGATCGGAGGCGTGCTGCAGATGATGACGGAGAAGATCGGAAATGTTGGCGACGGTGTATGGGCGGTGAAACGTGGCAGTAAATCATTGGATGTGGGGAGATGGTAA 1080 50.19 MGLLKFFRVKRKSKVADKKTVLDAQFEEGFFATRFRWTEIEAFTKNFSALVGSGGFSNVYLARTAPGMAAAVKILGASERLNRMFRQELDILLQLRHRNIVNFVGYCDERDEGALVFEYVPNGNLQEKLHNRAAATKTAVLPWKLRLLIAFQLAQAIEYLHEKCSLQIVHGDIKSSNILLDERFNCKLCDFGSAKMGFSSSVGNPSSSPSKSSPFRAKQLMMGSPGYTDPQYLRTGIASKKNDIYSFGVVLLELITGKEAFCLEKGQILTSILPPAVRDGGGIKPSEVAELVDPRLRGDYDGNEAGALISIASACVTQPPAPRPTIGGVLQMMTEKIGNVGDGVWAVKRGSKSLDVGRW 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1003369 1004807 - CePI673135_01g001170.1 Cec01g0117 193334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0117 359 PANTHER OS01G0253100 PROTEIN 19 335 - GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cec01g0117 359 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524(InterPro)
Cec01g0117 359 ProSiteProfiles Protein kinase domain profile. 45 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec01g0117 359 Gene3D Phosphorylase Kinase; domain 1 7 119 - -
Cec01g0117 359 Gene3D Transferase(Phosphotransferase) domain 1 120 341 - -
Cec01g0117 359 SUPERFAMILY Protein kinase-like (PK-like) 30 333 IPR011009 -
Cec01g0117 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec01g0117 359 SMART serkin_6 45 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec01g0117 359 Pfam Protein kinase domain 49 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0117 Cec-Chr1:1003369 Cec05g1184 Cec-Chr5:10793901 3.70E-46 dispersed
Cec01g0117 Cec-Chr1:1003369 Cec11g1723 Cec-Chr11:31497152 1.40E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71661 PF00069 Pkinase 1.40E-40 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0117 - - - 0.0