Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0127 ATGATGGACCCGCCGGAGCCGGAGGAGGAAGCTGCCGGTGGTTCTAATAGCGGCGGCGGGGGCGGAAGAGGAGGAGGAGAAGTTGAAAGGGAACACATGTTTGACAAAGTGGTGACTCCAAGTGATGTAGGGAAATTAAATCGGCTTGTTATTCCAAAGCAACATGCTGAGAGATTTTTCCCTTTAGATTCATCATCAAACGACAAGGGTTTACTGTTAAACTTCGAAGATCGAAACGGCAAATCATGGCGGTTCCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTTATGACCAAAGGCTGGAGTCGCTTCGTCAAGGAGAAACGCCTCGACGCCGGCGATATCGTCTCATTTCAACGTGGGGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGCCGCCCTGAACTCCCCATCCACCATCATCACCACCACCACTATCCCACCACCACCTCTCTCCGACCGAGCATCGTCGTCCCGAGCGGTGGTGCTACCACTTGGGGTCCATTAGTCTGGCAGCCACTCGGCGCAACAACAGCCGGATACCACCATCAGCCAGCTGCCGTAACACCGCGGGACCACACACACTTGTCGCAAATAAACAACAACAACAATGTGAATGGGATGTGTTGTCCGTACGGATATGGTAATGTTGAAACAACAACTTCTGGGTTAGTGTATTTGAGGACAGAATTAGGAGGAAGATCAAGAAGGGCAACTCCAAGATTAGGGGAAGAGGAATTTGAGTTGGAAATGGAAGGGAATAATAATTATCAGATGCAGCAGGAGTATTGTAGTAATGGTGGGGGTGCTTCAATGGTAATTCTACAAGGAAATTGTATGGAAGATCATAAATTAAAAACAACAAATAATAATAATAACAATAATTGTGAAGAAGATATACCAGTGAAGAAATCAAGATTGAGGCTATTTGGTGTAAACATGGAGATGGAGAGTCCAATTTCATCACCTTCTTCTGATGATTGTGATTTATTATTATCTACAAACCCCAAAACCACTACTACTACCACTCAATTCCAATTGCCTTCTTCAATTTACAAGTAA 1077 45.5 MMDPPEPEEEAAGGSNSGGGGGRGGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSSNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGEIGRDRLYIDWRRRPELPIHHHHHHHYPTTTSLRPSIVVPSGGATTWGPLVWQPLGATTAGYHHQPAAVTPRDHTHLSQINNNNNVNGMCCPYGYGNVETTTSGLVYLRTELGGRSRRATPRLGEEEFELEMEGNNNYQMQQEYCSNGGGASMVILQGNCMEDHKLKTTNNNNNNNCEEDIPVKKSRLRLFGVNMEMESPISSPSSDDCDLLLSTNPKTTTTTTQFQLPSSIYK 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1163092 1164168 + CePI673135_01g001270.1 Cec01g0127 193344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0127 358 SUPERFAMILY DNA-binding pseudobarrel domain 31 140 IPR015300 -
Cec01g0127 358 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 22 319 IPR044800 GO:0003700(InterPro)
Cec01g0127 358 FunFam B3 domain-containing protein 27 148 - -
Cec01g0127 358 CDD B3_DNA 32 121 IPR003340 GO:0003677(InterPro)
Cec01g0127 358 Pfam B3 DNA binding domain 34 138 IPR003340 GO:0003677(InterPro)
Cec01g0127 358 Gene3D - 28 150 IPR015300 -
Cec01g0127 358 ProSiteProfiles B3 DNA-binding domain profile. 34 139 IPR003340 GO:0003677(InterPro)
Cec01g0127 358 MobiDBLite consensus disorder prediction 1 29 - -
Cec01g0127 358 SMART B3_2 34 139 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0127 Cec-Chr1:1163092 Cec02g2231 Cec-Chr2:39724274 9.60E-10 dispersed
Cec03g0984 Cec-Chr3:17396500 Cec01g0127 Cec-Chr1:1163092 1.10E-33 transposed
Cec03g1432 Cec-Chr3:32008120 Cec01g0127 Cec-Chr1:1163092 6.90E-24 transposed
Cec05g2525 Cec-Chr5:36260130 Cec01g0127 Cec-Chr1:1163092 3.00E-40 transposed
Cec06g0239 Cec-Chr6:2554739 Cec01g0127 Cec-Chr1:1163092 2.00E-52 transposed
Cec10g1886 Cec-Chr10:33687955 Cec01g0127 Cec-Chr1:1163092 1.00E-38 transposed
Cec01g0127 Cec-Chr1:1163092 Cec07g0888 Cec-Chr7:21955307 3.50E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28827 PF02362 B3 5.40E-29 CL0405 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0127 K09287 - csv:101211271 493.812