Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0142 ATGGAGGTTGTTTCTCCGTTCAACGGCTGCTCCGGCAACACCGCCGGAAAAGTCATCATCTGCAAAGCTGCCGTCGCTCGGGGTCCCGGCGAGCCGTTGGTCATCGAACAAATCCGGGTCGACCCGCCCCAGAAAATGGAGGTTCGAGTCAAAATCCTCTTCACTTCCATTTGCCATACCGATCTCAGCGCTTGGAAAGGAGAGAATGAATCCCAAAGAGCTTATCCTCGTATTTTTGGCCATGAAGCCGTCGGGATTGTGGAGAGTGTAGGGGAGGGGGTGACGGAGCTGGCGGCGGGGGATCACGTGATTCCGCTATTCAACGGGGAGTGTGGCACGTGCCGATGTTGCAAGAACCCGACCACGAATTTGTGCGAGAAGATGGGAGTGGATCCAACGAAAAGTACGATGGTCGGGGACGGGAAAACCCGGTTCACGACGGCGGACGAACGACGGCAGCCGATTTACCACTTTCTAAACACGTCAACATTCAGCGAGTTCACGGTGGTGGACTCAGCTTGTGTGGTCAAGATTGACTCGGAAGCTCCCATCAAGAAGATGACTTTGCTAAGCTGTGGCCTTTCCACTGGAGTGGGAGCCGCGTGGAATACTGCGAACGTGGAAGCTGGATCAACGGTCGCGATTTTTGGATTGGGAGCCGTTGGACTTGCTGTTGCCGAAGGAGCAAGAGCCCGCGGAGCTTCTAAAATTATTGGTGTCGATGTCAATCCACACAAGGCTATTATGGGGAAGCAATTGGGAATCACCGACTTTATAAACCCCAGAGACTCCGACAAACCCGTTCACGAGAAAATCATGGAGATGACAAATGGAGGCGTTGACTACAGCTTTGAATGTGTTGGAAATGTGGAGGTTTTCCGAACGGCTTTCTTGTCTACTTACATTGGATGGGGAACTACGGTGATGTTGGGAATTCACACAAGCCCAAAAATGATGCCTCTTCATCCAATGGAGTTGTTCAGTGGGCGTAAAGTAGTAGCTTCCATTTTTGGAGGCTTTAAAGGCAGGACTCAACTTCCTCATTTTGCCAAACAATGCAACCAAGGGGTAAATCATTTTGACCATATCTGGACTCACTCTCTTCCTCCGATTCCTTCCTTTTCCTCATCTTCCATCCCAATTTTTATCATGACCGTTCCTGCTTCCGGTTTTATGATGGTAAACGGCGGATCAAGCTGTCTCCCACTCCCCCCAGATGTCGAGAATCAGACCGTCTCCGACCTGGTGAAACAATCCGAGTCTAATTTGAAAGAAGGCAATCTTTACTATGTTGTTTCTAATCGGTGGTATAGAAGATGGCAATTATATGTCGGACTGTCCACTGAAGAATTTTCTAGCAAAGATCATTCCTCTGATTCCCAACACTGTAATATGGTTCCTCCAAACGTGGTTGAAAGACCCGGTCCTATTGATAATTCAGATATAATCGTTAATGGAAGTGATTCTTCTAAGAACAATGATTTAGAGCTAAAAAGTTTTTTGGAGGAACGACGGGATTATGTTTTGGTTCCTAGTGAAGTGTGGGAAAAGCTTTATGATTGGTACAAAGGGGGGCCACCGTTACCAAGAAAGATGATATCTGTAGGTGTCAATCAAAAGAATTTTTCTGTGGAGGTTTATCTACTTTGTCTAAAATTGATTGATGCCAGAGATGCAAGTGAATGCACCATACGGTTGAGCAAGAAGGCCAACATATTTGATCTTCGTGAGAAGGTGTGTGCACTTAAAGGAATAAAGCAAGAAAAGGCATGTATATGGGACTACTTCAACCAGCAGAAACAATTAATATTGGATCCAACAACCCAAACCCTCGAAGAACTAAACTTGCAGATGAATCAACATATCCTCCTTGAAGTTGATGGACCTACTCCTCAGACCGGCATGGATGCCACTCGAAACGAGTTAGCTTTGGTAGCCCTTGAACCTTCAAGGTCAGCTCTGTCAATTGCAGGGGGGCCAGTGATGTCAAATGGGCATTCATCTGGTTATGGTTACCAGGGAAGTTCTTTAAGCACATCAGTTTCTGACATCGATGATAGAAATGATCTTAGTAATACTGCAAAGAAAAAAGAGAAGGGTGGTTTGGCAGGGCTGCAGAATTTAGGAAATACATGTTTTATGAATAGTGCCCTTCAATGTTTAGTTCACACGCCACCCCTTGTAGAGTATTTTTTACAAGATTATTCTGAAGAGATCAATGCAGATAATCCTTTGGGAATGCACGGAGAATTAGCCCTTGCTTTTGGTGAATTGTTGAGGAAATTATGGTCGGGACAAACCACAATTGCACCACGTGTATTCAAGGGAAAGTTAGCTCGGTTTGCTCCTCAGTTCAGTGGTTATAACCAGCATGATTCCCAAGAACTTCTTGCCTTCTTACTGGATGGACTGCATGAGGATCTGAATCGTGTTAAGCGAAAGCCTTATTTTGAAACAAAGGATTCTGATGGTCGTCCGGATGCAGAAGTTGCAGATGAGTGTTGGAGATACCATAAAGCAAGGAATGACTCTTTAATTGTGGATGTTTGTCAAGGTCAATATAAGTCAACATTGGTTTGTCCAGTTTGTGGAAAAATCTCAATTACTTTTGATCCATTTATGTATTTATCATTGCCGCTACCTTCAACTGTCACTCGCAGTGTGACAGTGACTGTGTTCTATGGTGACGGTAGTGGTCTTCCAATGCCATACACTGTGACAGTGCAAAGACATGGTTACACCAAAGATCTCACCAATGTATTGGCTTCTGCATGCTGCTTGAAGAGTGATGAAAATCTTCTGCTCGCAGAGGTTTATGATAACCGTATTTTCCGATATTTGGATAACCCTCTTGAATCTTTGACTTCAATTAAAGATGAAGAGTATCTAGTTGCCTATCGCCTTCCGAAAAGAGAGTCTGGAAGACCAAAGCTGGAGATCATTCACAGATCGCTGGAAAAATGCTCCATGGACCGTGTGAAGGGAATGGAGAGAAAGCTTTTTGGAACTCCTCTAGTCACATATTTGGGGGAAGACTTCCATAGTGGAGCCGACATAAATGCAGCTGTGTCTAAGATCCTATTGCCACTGAGGAGAACATACCCTTCAGCTAAAGCTCATGGTCATGGTAGCAAAGAAAATGGCTTTGTTTCTGAAATGAATGATGAACCAGGCAGCTGTGGCCCTCAGTCTGTTTCTATGAGTCAGTCAATTGACATTGAAGTAGAGGAAGCATCTGAAAAAGAGTCATCCTTTCAGCTTCTTTTAACGGATGATAAGGGTTTGAGCTGCAAGCCAATTGACAAGGATTCTACTATAAAATATGGTCCACTTATAAAGGTTTTCTTAGATTGGAACGACAGAGAACATGAATTATATGATGTGAGCTACATTAAGGATCTTCCTCCTGTTCACCAGACAAGGTTCATGAAGAAAACACGGCAGGAAGCAATCTCTTTGTTTTCTTGTTTGGAAGCATTCCTGACTGAAGAACCTTTAGGTCCTGATGATATGTGGTACTGCCCCAGGTGCAAGGAGCATAGACAGGCTACAAAGAAGTTAGACTTGTGGAAGTTGCCAGAGATTATTGTTTTTCACTTGAAGCGTTTTTCATATAGCAGATTCCTTAAAAACAAACTTGATACCTTTGTTGATTTCCCCATTCACAATCTTGATTTGAGTAAATATGTCAAAAGCAATGATGGAAAATCTTACTTATACAACCTATATGCCATTAGCAACCATTATGGTGGTCTTGGTGGTGGGCACTACACTGCATACGCAAAGTTAATCGATGAGAAGAGATGGTACCACTTTGATGACAGCCACGTTTCCCCAGTTGGCGAAGAAGAGATCAAGACCTCAGCTGCTTATTTGTTGTTCTATCAAAGACTTCATTCCAGCAGCTACAAGGAAGCTTAG 3921 44.1 MEVVSPFNGCSGNTAGKVIICKAAVARGPGEPLVIEQIRVDPPQKMEVRVKILFTSICHTDLSAWKGENESQRAYPRIFGHEAVGIVESVGEGVTELAAGDHVIPLFNGECGTCRCCKNPTTNLCEKMGVDPTKSTMVGDGKTRFTTADERRQPIYHFLNTSTFSEFTVVDSACVVKIDSEAPIKKMTLLSCGLSTGVGAAWNTANVEAGSTVAIFGLGAVGLAVAEGARARGASKIIGVDVNPHKAIMGKQLGITDFINPRDSDKPVHEKIMEMTNGGVDYSFECVGNVEVFRTAFLSTYIGWGTTVMLGIHTSPKMMPLHPMELFSGRKVVASIFGGFKGRTQLPHFAKQCNQGVNHFDHIWTHSLPPIPSFSSSSIPIFIMTVPASGFMMVNGGSSCLPLPPDVENQTVSDLVKQSESNLKEGNLYYVVSNRWYRRWQLYVGLSTEEFSSKDHSSDSQHCNMVPPNVVERPGPIDNSDIIVNGSDSSKNNDLELKSFLEERRDYVLVPSEVWEKLYDWYKGGPPLPRKMISVGVNQKNFSVEVYLLCLKLIDARDASECTIRLSKKANIFDLREKVCALKGIKQEKACIWDYFNQQKQLILDPTTQTLEELNLQMNQHILLEVDGPTPQTGMDATRNELALVALEPSRSALSIAGGPVMSNGHSSGYGYQGSSLSTSVSDIDDRNDLSNTAKKKEKGGLAGLQNLGNTCFMNSALQCLVHTPPLVEYFLQDYSEEINADNPLGMHGELALAFGELLRKLWSGQTTIAPRVFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYFETKDSDGRPDAEVADECWRYHKARNDSLIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSLPLPSTVTRSVTVTVFYGDGSGLPMPYTVTVQRHGYTKDLTNVLASACCLKSDENLLLAEVYDNRIFRYLDNPLESLTSIKDEEYLVAYRLPKRESGRPKLEIIHRSLEKCSMDRVKGMERKLFGTPLVTYLGEDFHSGADINAAVSKILLPLRRTYPSAKAHGHGSKENGFVSEMNDEPGSCGPQSVSMSQSIDIEVEEASEKESSFQLLLTDDKGLSCKPIDKDSTIKYGPLIKVFLDWNDREHELYDVSYIKDLPPVHQTRFMKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWKLPEIIVFHLKRFSYSRFLKNKLDTFVDFPIHNLDLSKYVKSNDGKSYLYNLYAISNHYGGLGGGHYTAYAKLIDEKRWYHFDDSHVSPVGEEEIKTSAAYLLFYQRLHSSSYKEA 1306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1335443 1356081 - CePI673135_01g001420.1 Cec01g0142 193359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0142 1306 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 480 1297 IPR050185 -
Cec01g0142 1306 SMART dusp 422 536 IPR006615 GO:0004843(InterPro)
Cec01g0142 1306 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 185 355 IPR036291 -
Cec01g0142 1306 Gene3D Cysteine proteinases 1059 1305 - -
Cec01g0142 1306 ProSiteProfiles DUSP domain profile. 403 533 IPR006615 GO:0004843(InterPro)
Cec01g0142 1306 Pfam Alcohol dehydrogenase GroES-like domain 45 178 IPR013154 -
Cec01g0142 1306 FunFam alcohol dehydrogenase 1-like isoform X1 29 196 - -
Cec01g0142 1306 Gene3D - 197 335 - -
Cec01g0142 1306 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 703 1298 IPR028889 -
Cec01g0142 1306 Pfam DUSP domain 427 533 IPR006615 GO:0004843(InterPro)
Cec01g0142 1306 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 1240 1257 IPR018200 GO:0004843(InterPro)
Cec01g0142 1306 Pfam Ubiquitin carboxyl-terminal hydrolase 703 1295 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Cec01g0142 1306 SUPERFAMILY DUSP-like 401 533 IPR035927 -
Cec01g0142 1306 Gene3D - 547 631 - -
Cec01g0142 1306 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 80 94 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Cec01g0142 1306 CDD Peptidase_C19R 1143 1296 - -
Cec01g0142 1306 Gene3D Cysteine proteinases 686 896 - -
Cec01g0142 1306 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 704 719 IPR018200 GO:0004843(InterPro)
Cec01g0142 1306 Gene3D - 393 546 IPR035927 -
Cec01g0142 1306 FunFam S-(hydroxymethyl)glutathione dehydrogenase 197 335 - -
Cec01g0142 1306 SUPERFAMILY GroES-like 14 205 IPR011032 -
Cec01g0142 1306 Pfam Zinc-binding dehydrogenase 220 339 IPR013149 -
Cec01g0142 1306 SUPERFAMILY Cysteine proteinases 701 1297 IPR038765 -
Cec01g0142 1306 Gene3D - 24 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0142 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0142 Cec-Chr1:1335443 Cec03g0236 Cec-Chr3:2625005 2.10E-232 dispersed
Cec01g0142 Cec-Chr1:1335443 Cec02g2366 Cec-Chr2:40892948 4.80E-192 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g254 . . . . Bpe05g00386 . Bma07g01033 . . . Cma02g00945 Cma15g01322 Car02g00694 Car15g01187 . . Cpe05g00768 . . . . . . . . . . . . . . . Cone12ag0581 . . . Csa05g00159 Chy09g01339 . . . . Bda09g00635 Bpe08g00906 . Bma05g00537 . . Cmo02g00954 Cmo15g01385 . . . . . . Bhi12g00080 . . Lac11g1903 Hepe06g1432 . Lcy12g1511 Cla01g00141 Cam01g0146 Cec01g0142 Cco01g0147 Clacu01g0141 Cmu01g0141 Cre09g2365 Lsi09g00132 . . Cme09g01886
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40