Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0162 ATGGATACTGCTCAATGGCCACAGGAGATTGTGGTGAAGCCAATTGAAGAAATTGTGACAAACACATGCCCAAAACCAAGCGTTTCAATTTTAGAGAGGAAAATTAGACCTCAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAACCAATACCAAGTTTTGTTATTACAATAATTATAGCCTTACACAACCAAGATACTTTTGCAAAGCTTGTAGAAGGTATTGGACTGAAGGTGGCTCCTTAAGAAACATTCCTGTTGGTGGAGGCTCAAGGAAGAACAAAAGACCTTCTTCTTCATCATCATCTACATCTCCCTCACCTTCTTCATCTCAACCTATTCCCAAGAAAATTCTTGATCTCCCTCAAAGCCCTAAAACCACCCAAGATCTCAACTTGTTCTTCCCACCCTCAAACCATCAAGATCATCATCATTTCATCACCAATAGCCTCCCCGAAATCGTTGCCCCTGCGATTGCCAGTTCCTCATCAGCCTCTACTGTTGCGACGGCGGCGGTGTCGTCGTCGCCTTCGGCCCCATCGCATCATCATTCGCTTTCGGCAATGGAGCTTCTCGCCGGGATGGCGAACAACAACAACAACAACTCTATGGGTTTGAACTGTTTCTTTCCAATGTCGTCTGTTGTTGTCCCTGATCCAGCTGGCTCCCTTTACACGGTAGGGTTTCCCGATCTCCATGATCAGTTCAAGTCAAACCTCGGATTATTCTCTCTTGATGGCTACAGCGTTGTCCCGACCGAGGGAAGCAAGGGTGGGGGGAGGCTTATGCAGCTGCCATTTGAGGATTTGAAGCAAGGGTCTAATGGAGGAGTTGAACAAGGCACAGAGCAAGGAGAGCATAATTCAAGTGGGTATTGGAATGGAATGTTGGGTGGAGGATCATGGTAA 912 46.05 MDTAQWPQEIVVKPIEEIVTNTCPKPSVSILERKIRPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKACRRYWTEGGSLRNIPVGGGSRKNKRPSSSSSSTSPSPSSSQPIPKKILDLPQSPKTTQDLNLFFPPSNHQDHHHFITNSLPEIVAPAIASSSSASTVATAAVSSSPSAPSHHHSLSAMELLAGMANNNNNNSMGLNCFFPMSSVVVPDPAGSLYTVGFPDLHDQFKSNLGLFSLDGYSVVPTEGSKGGGRLMQLPFEDLKQGSNGGVEQGTEQGEHNSSGYWNGMLGGGSW 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1564391 1565853 - CePI673135_01g001620.1 Cec01g0162 193379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0162 303 MobiDBLite consensus disorder prediction 84 124 - -
Cec01g0162 303 MobiDBLite consensus disorder prediction 276 297 - -
Cec01g0162 303 MobiDBLite consensus disorder prediction 272 303 - -
Cec01g0162 303 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec01g0162 303 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec01g0162 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 182 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0162 303 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec01g0162 303 MobiDBLite consensus disorder prediction 94 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0162 Cec-Chr1:1564391 Cec02g2196 Cec-Chr2:39408860 2.30E-33 dispersed
Cec01g0162 Cec-Chr1:1564391 Cec01g0026 Cec-Chr1:211257 3.50E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28829 PF02701 zf-Dof 2.70E-33 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0162 - - - 0.0