Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec01g0176 | ATGTCTTCCGTTACCCAAACAACACGCATGCCGATGCCGTACTATTTCCATCGTCATCTAACGACGCGCGCCAAGCCGTTTCGCGATTCTTTTTCTTTTCTTGTTTTTGTGACGGCGTTTTTCTCCCTCGACGAGCGACAGAGAGGATCGGCGGTTGATTTTCGAGCGGTTTCTGTCACCGGTGCCGTGACGAAGGAGTTTCAGATTTTGGAGGTATTTGTCTCTGTATATATCTCTGTGGAGGAAGGAATTGGAATTAGTGATTTCTTGATAGGTTGTGGAAGAGATGATATGTATATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATGTACCTCGCGTTGATGAGAGAGTTTTCTATTTCCCTCAGGGCCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTGCTTCAAAGATTCTATGTCGTGTAATTCATATTGAGCCGCTGGTACTACTCTTTCTCATCTTAAGTTGCTCTGTTATTTCTGCTTACTTCATTGCAGATCATGAATCGGATGAGGTTTATGCACAAATAACTTTAATGCCGGAATCAGATCAAAATGAGCCTAAAAGTATGGATCCATGTCCTCCTGAACCAGCTAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGACACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTACTGAGTGCCTACCTCCTTTGGACATGACTCTGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTGCATGGATATGAATGGCGATTCAAGCATATTTTCAGAGGACAGCCACGAAGGCACCTGCTGACAACTGGGTGGAGTACATTTGTTACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGGGAGACAACGGAGAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCGACAGCAAAGCAGCATGCCACCATCTGTTATATCGAGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCTCATGCTGTTACAACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAACTTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGCAGATATTTCACCTCATTGGCCTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTATGAGACCTGACAGGGTATCACCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAGGTCTATCTCAGCCCGTTTCAAAAAACAAAAGGCCTCGACAACCGACTCCAGCTCATGATGGTGCTGATTTGACTAAGCCAGGACATTGGGATTCTGGATTGGCACAGCCACATGATGGTAAACAATGTAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGCCACCATAGAGAGACAGATACCATCAGCAACAGCTCATGTGTATCAAGAGCACAGACTGATACCTGGCTATCTCCTATCCAATCCAATAGTTATAAACACCCAGTACATGACATGGCGCAGGATTATAAAACTGTCCCTGGCGTTGGTTGGTCCTTTCTGTTAGGAACTTCAACCTCTCATTTGGTTAAGTTAAGTGATGATCAACAAATACTGGACCCCACTGAAAATGGGAGGAACGGTGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTAGCTGCTGAGAAAGAACCTTCTCAACCAAGCAGTGTGTCTTGCGACACAGATGGGCGCATCAGTACCTTGTCAGTGGCTCAGTCCGATCCAAAATCTGACAACTTGGAGGTATCTATAGAAAGAAAATCAGAACCATCGCAGGCATCTCTGAAGGAGATTCAATGCAATCAAAGTAGCTCATCTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGGATGGCCGTGGGTAGGGCAGTGGACTTAACCATCTTAGAAGGCTATGACCAACTATTAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACTGACGATGAAGGGGATATGATGCTTGTTGGAGATGACCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTCATATGCTCTAGGGAGCAAGTGAAAAACATGGGCTCAGGAAGCAAGCAGCTGACCCCAATAGAAGTTGAAGGGGCTGTAGTAATCCCGGATTCCCCTGCACTATCTGAAGATCACGACGCCTGGCTAGCTGTCAAGAACAATGGGAGGTTGCAAAAAGCTTGTTGA | 2412 | 44.73 | MSSVTQTTRMPMPYYFHRHLTTRAKPFRDSFSFLVFVTAFFSLDERQRGSAVDFRAVSVTGAVTKEFQILEVFVSVYISVEEGIGISDFLIGCGRDDMYMELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLASKILCRVIHIEPLVLLFLILSCSVISAYFIADHESDEVYAQITLMPESDQNEPKSMDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGELRVGVRRRARQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNNFSVGMRFNMSFEGEDSPERRFSGTIIGAADISPHWPNSSWRSLRVQWDEQTSIMRPDRVSPWDIEPLTSSAVTGLSQPVSKNKRPRQPTPAHDGADLTKPGHWDSGLAQPHDGKQCSNAAESRKGENNELCHHRETDTISNSSCVSRAQTDTWLSPIQSNSYKHPVHDMAQDYKTVPGVGWSFLLGTSTSHLVKLSDDQQILDPTENGRNGETVASCRLFGIDLNHLAAEKEPSQPSSVSCDTDGRISTLSVAQSDPKSDNLEVSIERKSEPSQASLKEIQCNQSSSSNTRSRTKVHMHGMAVGRAVDLTILEGYDQLLDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKNMGSGSKQLTPIEVEGAVVIPDSPALSEDHDAWLAVKNNGRLQKAC | 803 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1705659 | 1712685 | + | CePI673135_01g001760.1 | Cec01g0176 | 193393 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec01g0176 | 803 | ProSiteProfiles | B3 DNA-binding domain profile. | 220 | 322 | IPR003340 | GO:0003677(InterPro) | |
Cec01g0176 | 803 | SMART | B3_2 | 220 | 322 | IPR003340 | GO:0003677(InterPro) | |
Cec01g0176 | 803 | CDD | B3_DNA | 218 | 320 | IPR003340 | GO:0003677(InterPro) | |
Cec01g0176 | 803 | Pfam | B3 DNA binding domain | 220 | 321 | IPR003340 | GO:0003677(InterPro) | |
Cec01g0176 | 803 | Pfam | AUX/IAA family | 718 | 751 | IPR033389 | - | |
Cec01g0176 | 803 | Pfam | AUX/IAA family | 662 | 708 | IPR033389 | - | |
Cec01g0176 | 803 | MobiDBLite | consensus disorder prediction | 612 | 641 | - | - | |
Cec01g0176 | 803 | Gene3D | - | 381 | 454 | - | - | |
Cec01g0176 | 803 | FunFam | Auxin response factor | 218 | 322 | - | - | |
Cec01g0176 | 803 | MobiDBLite | consensus disorder prediction | 611 | 676 | - | - | |
Cec01g0176 | 803 | Pfam | Auxin response factor | 346 | 424 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cec01g0176 | 803 | FunFam | Auxin response factor | 381 | 452 | - | - | |
Cec01g0176 | 803 | MobiDBLite | consensus disorder prediction | 451 | 465 | - | - | |
Cec01g0176 | 803 | Gene3D | - | 217 | 322 | IPR015300 | - | |
Cec01g0176 | 803 | MobiDBLite | consensus disorder prediction | 649 | 676 | - | - | |
Cec01g0176 | 803 | MobiDBLite | consensus disorder prediction | 451 | 502 | - | - | |
Cec01g0176 | 803 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 97 | 761 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cec01g0176 | 803 | FunFam | Auxin response factor | 667 | 760 | - | - | |
Cec01g0176 | 803 | SUPERFAMILY | DNA-binding pseudobarrel domain | 211 | 349 | IPR015300 | - | |
Cec01g0176 | 803 | SUPERFAMILY | CAD & PB1 domains | 667 | 748 | - | - | |
Cec01g0176 | 803 | Gene3D | - | 667 | 760 | - | - | |
Cec01g0176 | 803 | ProSiteProfiles | PB1 domain profile. | 672 | 753 | IPR053793 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec01g0176 | Cec-Chr1:1705659 | Cec07g1249 | Cec-Chr7:28004971 | 1.80E-221 | dispersed | |
Cec01g0176 | Cec-Chr1:1705659 | Cec09g0941 | Cec-Chr9:8919860 | 1.50E-199 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28832 | PF02309 | AUX_IAA | 2.30E-12 | CL0072 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec01g0176 | K14486 | - | csv:101209208 | 1259.2 |