Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0176 ATGTCTTCCGTTACCCAAACAACACGCATGCCGATGCCGTACTATTTCCATCGTCATCTAACGACGCGCGCCAAGCCGTTTCGCGATTCTTTTTCTTTTCTTGTTTTTGTGACGGCGTTTTTCTCCCTCGACGAGCGACAGAGAGGATCGGCGGTTGATTTTCGAGCGGTTTCTGTCACCGGTGCCGTGACGAAGGAGTTTCAGATTTTGGAGGTATTTGTCTCTGTATATATCTCTGTGGAGGAAGGAATTGGAATTAGTGATTTCTTGATAGGTTGTGGAAGAGATGATATGTATATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATGTACCTCGCGTTGATGAGAGAGTTTTCTATTTCCCTCAGGGCCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTGCTTCAAAGATTCTATGTCGTGTAATTCATATTGAGCCGCTGGTACTACTCTTTCTCATCTTAAGTTGCTCTGTTATTTCTGCTTACTTCATTGCAGATCATGAATCGGATGAGGTTTATGCACAAATAACTTTAATGCCGGAATCAGATCAAAATGAGCCTAAAAGTATGGATCCATGTCCTCCTGAACCAGCTAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGACACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTACTGAGTGCCTACCTCCTTTGGACATGACTCTGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTGCATGGATATGAATGGCGATTCAAGCATATTTTCAGAGGACAGCCACGAAGGCACCTGCTGACAACTGGGTGGAGTACATTTGTTACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGGGAGACAACGGAGAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCGACAGCAAAGCAGCATGCCACCATCTGTTATATCGAGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCTCATGCTGTTACAACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAACTTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGCAGATATTTCACCTCATTGGCCTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTATGAGACCTGACAGGGTATCACCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAGGTCTATCTCAGCCCGTTTCAAAAAACAAAAGGCCTCGACAACCGACTCCAGCTCATGATGGTGCTGATTTGACTAAGCCAGGACATTGGGATTCTGGATTGGCACAGCCACATGATGGTAAACAATGTAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGCCACCATAGAGAGACAGATACCATCAGCAACAGCTCATGTGTATCAAGAGCACAGACTGATACCTGGCTATCTCCTATCCAATCCAATAGTTATAAACACCCAGTACATGACATGGCGCAGGATTATAAAACTGTCCCTGGCGTTGGTTGGTCCTTTCTGTTAGGAACTTCAACCTCTCATTTGGTTAAGTTAAGTGATGATCAACAAATACTGGACCCCACTGAAAATGGGAGGAACGGTGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTAGCTGCTGAGAAAGAACCTTCTCAACCAAGCAGTGTGTCTTGCGACACAGATGGGCGCATCAGTACCTTGTCAGTGGCTCAGTCCGATCCAAAATCTGACAACTTGGAGGTATCTATAGAAAGAAAATCAGAACCATCGCAGGCATCTCTGAAGGAGATTCAATGCAATCAAAGTAGCTCATCTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGGATGGCCGTGGGTAGGGCAGTGGACTTAACCATCTTAGAAGGCTATGACCAACTATTAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACTGACGATGAAGGGGATATGATGCTTGTTGGAGATGACCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTCATATGCTCTAGGGAGCAAGTGAAAAACATGGGCTCAGGAAGCAAGCAGCTGACCCCAATAGAAGTTGAAGGGGCTGTAGTAATCCCGGATTCCCCTGCACTATCTGAAGATCACGACGCCTGGCTAGCTGTCAAGAACAATGGGAGGTTGCAAAAAGCTTGTTGA 2412 44.73 MSSVTQTTRMPMPYYFHRHLTTRAKPFRDSFSFLVFVTAFFSLDERQRGSAVDFRAVSVTGAVTKEFQILEVFVSVYISVEEGIGISDFLIGCGRDDMYMELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLASKILCRVIHIEPLVLLFLILSCSVISAYFIADHESDEVYAQITLMPESDQNEPKSMDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGELRVGVRRRARQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNNFSVGMRFNMSFEGEDSPERRFSGTIIGAADISPHWPNSSWRSLRVQWDEQTSIMRPDRVSPWDIEPLTSSAVTGLSQPVSKNKRPRQPTPAHDGADLTKPGHWDSGLAQPHDGKQCSNAAESRKGENNELCHHRETDTISNSSCVSRAQTDTWLSPIQSNSYKHPVHDMAQDYKTVPGVGWSFLLGTSTSHLVKLSDDQQILDPTENGRNGETVASCRLFGIDLNHLAAEKEPSQPSSVSCDTDGRISTLSVAQSDPKSDNLEVSIERKSEPSQASLKEIQCNQSSSSNTRSRTKVHMHGMAVGRAVDLTILEGYDQLLDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKNMGSGSKQLTPIEVEGAVVIPDSPALSEDHDAWLAVKNNGRLQKAC 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1705659 1712685 + CePI673135_01g001760.1 Cec01g0176 193393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0176 803 ProSiteProfiles B3 DNA-binding domain profile. 220 322 IPR003340 GO:0003677(InterPro)
Cec01g0176 803 SMART B3_2 220 322 IPR003340 GO:0003677(InterPro)
Cec01g0176 803 CDD B3_DNA 218 320 IPR003340 GO:0003677(InterPro)
Cec01g0176 803 Pfam B3 DNA binding domain 220 321 IPR003340 GO:0003677(InterPro)
Cec01g0176 803 Pfam AUX/IAA family 718 751 IPR033389 -
Cec01g0176 803 Pfam AUX/IAA family 662 708 IPR033389 -
Cec01g0176 803 MobiDBLite consensus disorder prediction 612 641 - -
Cec01g0176 803 Gene3D - 381 454 - -
Cec01g0176 803 FunFam Auxin response factor 218 322 - -
Cec01g0176 803 MobiDBLite consensus disorder prediction 611 676 - -
Cec01g0176 803 Pfam Auxin response factor 346 424 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec01g0176 803 FunFam Auxin response factor 381 452 - -
Cec01g0176 803 MobiDBLite consensus disorder prediction 451 465 - -
Cec01g0176 803 Gene3D - 217 322 IPR015300 -
Cec01g0176 803 MobiDBLite consensus disorder prediction 649 676 - -
Cec01g0176 803 MobiDBLite consensus disorder prediction 451 502 - -
Cec01g0176 803 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 97 761 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec01g0176 803 FunFam Auxin response factor 667 760 - -
Cec01g0176 803 SUPERFAMILY DNA-binding pseudobarrel domain 211 349 IPR015300 -
Cec01g0176 803 SUPERFAMILY CAD & PB1 domains 667 748 - -
Cec01g0176 803 Gene3D - 667 760 - -
Cec01g0176 803 ProSiteProfiles PB1 domain profile. 672 753 IPR053793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0176 Cec-Chr1:1705659 Cec07g1249 Cec-Chr7:28004971 1.80E-221 dispersed
Cec01g0176 Cec-Chr1:1705659 Cec09g0941 Cec-Chr9:8919860 1.50E-199 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28832 PF02309 AUX_IAA 2.30E-12 CL0072 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0176 K14486 - csv:101209208 1259.2