Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0224 ATGGGTGCATCGTCGCCACACGAGATGAACTTGAATAGAATTATCTTATACATCGATGGCTTAAATTTGCTCCTCAACCGTGTCGGCCAAATGGACCCATCCCAATTATGCAATCTCTGCTTTTCCATTGCCAGAAGTATCGACTATACAATTGCAAACAACATTGTTCCATCTAAAGCTCACAGTTTACCTAGTTTCATCAAACAGTTATGTCAGATGAAGCATTCTCATCGCTTAAAAGCAGCACTCATGGTACTCATGATAACCATCAAGAATGCTTGCAAGGCAAAATGGTTTTCAGAAAAGGATGCAGAAGAACTCTATAGTCTAGCCAATGAGATTGGTAACGATTTCTTCGGAGATACGAATATTGGACAAAGCAATCCCCTTGCCACGATTAGTACAGTTATGGAAAGATTTTTTCCTCGCTTGAAGCTGGGTCAGATTGTTGCATCTGTAGAAGTTAAGCCTGGATATGGAGTATATGCTATTGATTTCAATATTTTAAAGACAATCCAATATGCACCGCAGGAGAAACTACGACTGTTTGTTGCTCAAAAAGATAATACTGAGACGTCTGCATGCATAATCAGTCCTCCACAAGTTAACTTCCTTGTCAATGGGAGGGGAGTCAACGGAAGGACAAATATATACGTGGATACTGGACCCCAACTTCCAACAAATATAACTCATATGCTTAAATTAGGATCAAATCTTCTCCAAGCAATTGGGAGCTTCAACGGTCATTATGTTATAGCAGTTGCCATCATGGGTACTGCACCATCACCTGACTCCTCTGTTCTGCAAGATCATATACAGCCAGTTGTTTCTACTGTGGATTCAGATTCTGATATAATTGAGGGCCCATCACGAATATCCCTTAATTGCCCCATAAGCTATACCCGAATCAAGGTTCCTGTGAAAGGTCGTTCTTGTAAACATCTTCAGTGCTTTGATTTCCACAACTTTATTGACATAAATTCAAGAAGACCATCCTGGCGATGTCCACATTGTAATCAGTACATCTGCTTTTTGGATATTCGTGTTGATCAAAATATGTTGAAGGTCATTAGAGAAGTGGCTGAGAACGTTACTGAAGTTATTATCTCAGCAGATGGATCATGGAAGGCTATCCTTGAAAATGATCATGGGGATGGTCGGCCATTGGATGATTCTCTTAACCATCAGAAAGAAAGGGCACAAGAAGAGTCTACTGCCCCTCCTGATGTGTTAGATCTTACTGAGGTTGATGATGATATGGACATCTGCAATTTGGAGACTGAAGACAGGAAAACTTGTCTTGATAATAAAAACCAACCAGTTTCTTCGAGTTTAGATATATCATCTGGAATGAACATGAATAGCTTGAATCAAAATCTTGCTGCTGTCTTGGATGACGACTTTTGGTCTGGAATAGTTACTGATGGGATTTTGACCTCAAGTGCTGGGTCAGATGCTCCAATGGGTAATAGCACGCCTCCACCTGGTTTTGCTGGTATTATGCAACCCACTGTCTTGACTGATGTTGTCCCACCTGTTCTTAATCATGGTGCGGGGGTTCCAGGGCATGCCAACTTTTCATCTTCTGCATTCTATGATCAAAACAATTTGCAGATTCAAGTTCCGAATTCAAATGAAAATAATCAATATGGGAGGATGCCATTAATAGCAAGACCTGTAAGCAGGACGCCAATTGCAGTTCAAGCCCTTCCTGCTCAATCCCAAGTTGCAGGCCAGCAATATAGTTCAAGAACTCCGATCATTTCCTCTGCTCCTCAAGTTGGACAAAGCATTCCGATTAACAGAGATGGTTTAAATACATTATCTCGTGATTTAGAAAGGAGACAACAATTTTCGAGACATCATGGAGATTCACATCACGCAACAAACCTAGCTCCATTTCACCACCCACAAACCGTGCAGAACCGGGATTCTCAAGATCGTTCCTTCACTCCTGGTCAATCTGTTCAAGCATCGACTACTCTAAGGCCATCCACGGGGCTATTAACCGATTTCCAAAATCCTCACCTTCAGCAAGCTCTCAATATGAGGATATCCCACCTCCGGAGTCAGAACTCCAGCAGTGTCCGGCCATCTTTGCCATTCTCAAGCCCTATGAGTCAAGCAGGAGGTGGATATGCTTATACAGCAGTAACACCTAATAGTCAACATGCAAGAATGGTGGCTGCTTCCCAGCGAGCTGAGATGATGAGACAATCTTCAGCCATGTCATTACAAAATCAAACTTCCAGATCCGCGCACTCTCTCCAAACTACCCCTGATGGGCTTAGGAGACCAGCTGGGGAGATGAGAAATGTTGGAGTATCTCCATCTGTTACTATGGCTCCAGGTTCGGTAGATCTATCTGTAGAACAGAACTGGCAGCCTGTAGGTCGAATGCGTGGCAGTCTTTCCGGTCGAGCTTATTCTGATGCTTATGGTGTAATTATTCAGCCAACTCAAGCTGCACAGTCTGCTCGACCGCCATCTCATTTGACACCTACTCAACCCAGTGCTCCATCGACGCAGGCTCAAAGGTTCTCTTCCGTTTCCTATGGCTCCATTTATCAACTGTGTTGTTCTTTGAGGGACAACGGTCTGGAAAGTTGCCTGTGCCGATGTGACTCTGCACTCTCCGATGGAAGCTATGAAAATTATCTCTTTCAGTTTGCTGATCAGTTTAGAGGATCTTACTCTGCTTCTTGTCCATTCTACTGTTCTTTTTCTGGGTACCAGGATGAGTTGCTGTGGGCAGCGGCTTGGGTATACAAAGCAAGTGGAAATAGCAAATATTTGAGCTATATTTTAAGCAACCAAGGGTGGAGTCAACCCACATCCCAGTTTAGTTGGGACAACAAATTTGTTGGAGCTCAGACAATATTAGCAAAGATCGATGCAGAATCGTTCATTTGCACAATGCCTAGTGGCAGCTCTTCTAAGATTCCCACAACACCCGGTGGGCTTCTTTTCCTAAGAGATAATAGTAATTTGCAGTTTGCATCAACCTCTTCCATGGTGCTTTTCATGTATTCTAGACTTTTAAACCAAGCTCATGTTGATGGAGTTCATTGTGGATCCAAATATTTCTCCTATTCTCAAATCAAAACCTTTGCCAAATCACAGTTCAGTGATTTGAGATCAGACCACTCTCATTCTGAACCTACAACTTATATGAATGCTGCTTTTGTTGGTTCAGTAGCTGCCTTAGTTGCATAA 3216 42.66 MGASSPHEMNLNRIILYIDGLNLLLNRVGQMDPSQLCNLCFSIARSIDYTIANNIVPSKAHSLPSFIKQLCQMKHSHRLKAALMVLMITIKNACKAKWFSEKDAEELYSLANEIGNDFFGDTNIGQSNPLATISTVMERFFPRLKLGQIVASVEVKPGYGVYAIDFNILKTIQYAPQEKLRLFVAQKDNTETSACIISPPQVNFLVNGRGVNGRTNIYVDTGPQLPTNITHMLKLGSNLLQAIGSFNGHYVIAVAIMGTAPSPDSSVLQDHIQPVVSTVDSDSDIIEGPSRISLNCPISYTRIKVPVKGRSCKHLQCFDFHNFIDINSRRPSWRCPHCNQYICFLDIRVDQNMLKVIREVAENVTEVIISADGSWKAILENDHGDGRPLDDSLNHQKERAQEESTAPPDVLDLTEVDDDMDICNLETEDRKTCLDNKNQPVSSSLDISSGMNMNSLNQNLAAVLDDDFWSGIVTDGILTSSAGSDAPMGNSTPPPGFAGIMQPTVLTDVVPPVLNHGAGVPGHANFSSSAFYDQNNLQIQVPNSNENNQYGRMPLIARPVSRTPIAVQALPAQSQVAGQQYSSRTPIISSAPQVGQSIPINRDGLNTLSRDLERRQQFSRHHGDSHHATNLAPFHHPQTVQNRDSQDRSFTPGQSVQASTTLRPSTGLLTDFQNPHLQQALNMRISHLRSQNSSSVRPSLPFSSPMSQAGGGYAYTAVTPNSQHARMVAASQRAEMMRQSSAMSLQNQTSRSAHSLQTTPDGLRRPAGEMRNVGVSPSVTMAPGSVDLSVEQNWQPVGRMRGSLSGRAYSDAYGVIIQPTQAAQSARPPSHLTPTQPSAPSTQAQRFSSVSYGSIYQLCCSLRDNGLESCLCRCDSALSDGSYENYLFQFADQFRGSYSASCPFYCSFSGYQDELLWAAAWVYKASGNSKYLSYILSNQGWSQPTSQFSWDNKFVGAQTILAKIDAESFICTMPSGSSSKIPTTPGGLLFLRDNSNLQFASTSSMVLFMYSRLLNQAHVDGVHCGSKYFSYSQIKTFAKSQFSDLRSDHSHSEPTTYMNAAFVGSVAALVA 1071
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2207832 2227830 + CePI673135_01g002240.1 Cec01g0224 193441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0224 1071 SUPERFAMILY Six-hairpin glycosidases 887 1070 IPR008928 GO:0005975(InterPro)
Cec01g0224 1071 Gene3D - 867 1043 IPR012341 GO:0005975(InterPro)
Cec01g0224 1071 MobiDBLite consensus disorder prediction 745 768 - -
Cec01g0224 1071 Pfam MIZ/SP-RING zinc finger 292 340 IPR004181 GO:0008270(InterPro)
Cec01g0224 1071 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 26 546 - GO:0000790(PANTHER)|GO:0016925(PANTHER)|GO:0061665(PANTHER)
Cec01g0224 1071 MobiDBLite consensus disorder prediction 616 670 - -
Cec01g0224 1071 Pfam Glycosyl hydrolase family 9 887 1042 IPR001701 GO:0004553(InterPro)|GO:0005975(InterPro)
Cec01g0224 1071 MobiDBLite consensus disorder prediction 745 759 - -
Cec01g0224 1071 ProSiteProfiles Zinc finger SP-RING-type profile. 281 362 IPR004181 GO:0008270(InterPro)
Cec01g0224 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 377 IPR013083 -
Cec01g0224 1071 CDD SP-RING_PIAS-like 293 340 - -
Cec01g0224 1071 MobiDBLite consensus disorder prediction 822 842 - -
Cec01g0224 1071 MobiDBLite consensus disorder prediction 632 670 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0224 K04706 - - csv:101213115 1401.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0224 Cec-Chr1:2207832 Cec09g0546 Cec-Chr9:4714286 2.00E-31 dispersed
Cec01g0224 Cec-Chr1:2207832 Cec10g1123 Cec-Chr10:24778446 1.60E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g46 . . . . . . . Bma14g00596 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0283 . . . Csa05g00238 Chy09g01263 . . . . . . . . . . Cmo02g01457 . . . . . . . Bhi12g00324 . . Lac11g2044 Hepe06g1510 . Lcy12g1609 Cla01g00226 Cam01g0233 Cec01g0224 Cco01g0236 Clacu01g0228 Cmu01g0221 Cre09g2288 Lsi09g00216 . . Cme09g01802
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003920 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 3 2 1 1 1 1 1 1 2 1 2 1 3 42