Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0226 ATGGGGTCTATGCTCGGTGACTGCCGTCATATGACCCTCACAACTTCAGCCAATTCCGATCCTCTGATCCTTCAACTCCTTCCAGATTCTAAGAGCATCTCAACTAAAGCTACCAGACGTTGTATCCCTTTTGGATATAAGACAGACGATGATTCCTGCAATCTATCATCCATCCAACCCACAGTAGGACTCGTCCAGTTCCCCCACCAGATCAGGGTAAGCAAGAAAGAGGCTGCAAAAAGAACGCAAAAGCTTCAAAATTCAAGTAGAATGGAGCCAGCAGGTTTATTCCAATCCTCCATGAGATTTTTCTCCGATCAAGAACTCTGCTACGCCGATATCCTCACTCCTCAAGAGGTTGTGGCCAGAATTCAAGTAGCTGTCCTCAACTTCCTCAGAATTCTCAGCTCCCCCACTCCAGCCATCTCAAATCTTCCTCTGATTGATCGAAGATCGAGCAATAGCCGAGTGAATCAAGGAATTTTAGTGGATGCTTCATGGATTTTCCTTTCGCACTCCTTTTGTACGAGGTCTTTGATGAGAGCCAATGCTGCCAAGGCCTTTGTTAGAGTGTGGAAGCTGATGGAGATGTGCTCTCAGATTCTGATTCAGGATAAGCGAGTGACGCAGAGGGAGCTCTTCTACAAGCTACTCTGTAATTCACCTGCTTATTTTCCGACTCAGTTGCATGTCAATAGGACAGTTCAAGATGTTGTAGCCTTACTTCGATGTAGCCGTTACAGCCTTGGCATTATGGCATCTAGCAGGGGACTTGTTGCCGGCCGTCTACTGTTGCAGGCACATTGCGCTGCCTTTCTTATTGATTTGTTTATTTACGAGCCAGAGCAAGAAGTTGTGGACTGTACTGCCTGTGGGTCTTCTGGATATGCCATTTCAGGTGACTTGGACTTGTTGCAGAAGTTGACTCTGAAGACTGATGCTCGGTACGTAATTGTAATTGAAAAGCATGCAATATTCCAGCGGTTGGCAGAGGATCACGTTTTCAATCACATTCCCAGTATTCTTATCACAGCCAAAGGATATCCGGACATAGCCACAAGGTACTTTCTTCACAGAATTAGCAAAACGTTTCCTCTTCTGCCAATATTCGGCCTTGTTGATTGGAACCCTGCGGGATTGGCTATATTATGCACCTTCAAGTATGGAAGTATAGGGATGGGCTTGGAGGCGTACAGATATGCTTGCAATGTTAAATGGTTGGGAGTACGAGGAGACGATTTACAACTGATACCACAAGAATCTCTGGTTCCACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGATGTCCTCAGAAATATTACAGGAGAATTATCGACAAGAGCTGACCTTAATGGTTGAGAGAGGGCAAAAGGCTGAACTTGAAGCTTTATACCACAATGGATTTGATTATTTGGAGAACTGCTTCAGCTTTAAAGATACCCCAGATTTTACTGTTACCATGCCAAAGAAGTCGTCATACTGCGGCGTCACCGGAGTCTTCATCGTCACTTTCATCAAAGGAAGTCTTTCTCCCTTGAAAGTAGCAGCCAGCATTCTCATGGGGTCTATGCTCGGTGACCTGCCGTCATATGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCGACTCCTTCTAAGATGATTCCTGCAACCTATCATCCAACCCACAGTAGGACCCTTCCCCCACCAGATCAAGTTATAAATACAGAGGCCAAAAATATACTTATACGACACATTTATCAGCATACAGAAGAGAAGGTTAGTAAAAGAAAGATGTCAAGAACAAAGAGACCTGCAGCTGAGCATCCCGTGCCCGAGCACGGAAGCAAGCAACCAAGAGCATCTACTACCAACACTTCAAATTGA 1878 45.53 MGSMLGDCRHMTLTTSANSDPLILQLLPDSKSISTKATRRCIPFGYKTDDDSCNLSSIQPTVGLVQFPHQIRVSKKEAAKRTQKLQNSSRMEPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDRRSSNSRVNQGILVDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQRELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCAAFLIDLFIYEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDHVFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLMVERGQKAELEALYHNGFDYLENCFSFKDTPDFTVTMPKKSSYCGVTGVFIVTFIKGSLSPLKVAASILMGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTEEKVSKRKMSRTKRPAAEHPVPEHGSKQPRASTTNTSN 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2234905 2244137 + CePI673135_01g002260.1 Cec01g0226 193443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0226 625 MobiDBLite consensus disorder prediction 536 556 - -
Cec01g0226 625 Gene3D - 256 480 - -
Cec01g0226 625 Pfam Topoisomerase 6 subunit A/Spo11, Toprim domain 316 475 IPR034136 -
Cec01g0226 625 Pfam Type IIB DNA topoisomerase 187 251 IPR013049 GO:0003677(InterPro)|GO:0003824(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0006259(InterPro)
Cec01g0226 625 PRINTS DNA topoisomerase VI subunit A family signature 341 362 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Cec01g0226 625 PRINTS DNA topoisomerase VI subunit A family signature 228 245 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Cec01g0226 625 PRINTS DNA topoisomerase VI subunit A family signature 374 390 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Cec01g0226 625 PRINTS DNA topoisomerase VI subunit A family signature 317 334 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Cec01g0226 625 Pfam Det1 complexing ubiquitin ligase 524 589 IPR018276 -
Cec01g0226 625 FunFam Meiotic recombination protein SPO11-2 110 254 - -
Cec01g0226 625 SUPERFAMILY DNA topoisomerase IV, alpha subunit 185 474 IPR036078 GO:0003677(InterPro)|GO:0005694(InterPro)
Cec01g0226 625 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 116 475 IPR002815 GO:0000228(PANTHER)|GO:0000706(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)|GO:0007131(PANTHER)|GO:0042138(PANTHER)
Cec01g0226 625 MobiDBLite consensus disorder prediction 536 569 - -
Cec01g0226 625 CDD TOPRIM_TopoIIB_SPO 315 472 IPR034136 -
Cec01g0226 625 MobiDBLite consensus disorder prediction 586 625 - -
Cec01g0226 625 Gene3D - 108 254 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0226 K10878 - - csv:101213596 669.848
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g42 . . . . . . . . . . Cma02g01426 Cma15g01253 . Car15g01130 . . Cpe05g00360 . . . . . . . . . . . . . . Cone8ag0277 Cone12ag0284 . . . Csa05g00241 Chy09g01261 . . . . . . Bpe11g00670 . . . Cmo02g01460 Cmo15g01318 . . . . . Cpe13g00132 Bhi12g00316 . . . . . . Cla01g00228 Cam01g0235 Cec01g0226 Cco01g0238 Clacu01g0230 Cmu01g0223 Cre09g2286 Lsi09g00218 . . Cme09g01799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006132 0 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 39