Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0238 ATGGCTGGAGAGCTTTGTGAAGGAGGAGAAAAATCAAACGAGATGGTAGTTGGAGGAGGGTTTTTTTACAATTCCAATTCAAATTCAAACAACATCCCAAATCAGTTCACAAATCAGATCCAAACCAGGTTCGGTTCCACCACCGAACACGCGGCGGAGATGTTCAATGAGTCGAGTGGTGGCGGTGGTGGTGAAGACGATGAGTCGTTTCATCAGAATATGATGGTGGTTGGACCGTGGGGGACAACAACGACGACGATGGCGACGACGGATTCTTCTTTAAGATGTGTGTTTCCATGTGAACCAAATGAAAGACCAAGCCAAGGCCTTTCTTTGTCTCTTAGTTCTTCTAATCCTTCTTCTATTGGCTTACAATCTTTTGAACTAAGACAACAACACCAATCATCTTTCCCCATTTTTCACCTTAGAAACTCAAGGTTCTTAATCCCAACTCAAGAGCTTCTTTATGAGTTTTGTAGCCTTGGAATCACCAATAACATCAATCATTCTTCTTCCTCACCAAAACAAAAACATGGCTCTTCTTCTACCACTTTCTCTCTTCAATCACTTGATTTCATGGACTTGCAAAAGAGGAAAACTAAGCTTTTCTCCATGCTTGAAGAGGTTGAAAGAAGGTATAGGCATTATTGCGAGCAAATGAAGGCGGTGGTGGCGTCATTCGAAGCAGTGGCGGGGAATGGGGCGGCGAGGGTGTACTCGGCGTTAGCGTCGAAAGCGATGTCGAGGCATTTTAGGAGCCTAAAAGATGGGATTGTGGGGCAAATTCAAGCCACAAGAAAGGCAATGGGAGAAAAGGATCCAATTGCACCTGGTACAACAAGAGGAGAAACACCAAGGCTTAGAGTGATTGATCAAGCTTTAAGGCAACAAAGAGCTTTCAATCAAATCAGCATCATGGAAAGCCATCCATGGCGCCCTCAACGTGGCCTCCCCGAGCGTTCTGTTTCGGTTCTTCGTGCTTGGCTTTTCGAACACTTTCTTCACCCGTACCCTAGCGATGTGGATAAACATATTTTAGCTCGCCAAACTGGTCTATCCAGAAGCCAGGTGTCAAATTGGTTCATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTAGAAGAGATGTATTTGGAAGAAACAAAGGAACAAGAGAAAGAGATTGACAACAGTTTCAACAACATGAACAACAATGCCAACAACTCTTTTGATGGGGTGGGGGATTTCGACGACGAAATTGACGGTCATCGATCGATCGTGACACGACTCGAGGATCAGAAGCCAACTCCGGATCAACTCCTAAGAATAGACTCGGAATGTCTCTCTTCAATCATCTCTAATAACACGGAGAAGAATGACTCAAGAACAATGAAAACCCTGCAAAACCACCACCTCCACGAAAACCACAACCACACCTTCGGACGGGTTGTGAGTGACGCCTTCGGCACGGTAGAGCTCGACTTCTCGTCCTACAACCACCATACCGGTAGTGGTGGAGTTACGTACCCTAACAACAACAACAACAATCAACATTTCAACAACGGCAATGGTGGGGGCGTGTCGTTGACATTAGGGTTACAGCAGCACGCAGCTGCGGGGAATGGAAACGGAGGGGTGAGCATCGCCTTCTCTCCAGCGGCAGCGGCGGCACAAAGCTCCCTTTTCTTCACAAGAGATCACATGGAAGAATGCCAACCAGTTCAGTATTCCCTTTTAGATGGAGAAACTCAGAATCTTCCATACAGAAATTTGATGGGTGCTCAATTGCTTCATGATTTGGCTGGATAA 1788 45.92 MAGELCEGGEKSNEMVVGGGFFYNSNSNSNNIPNQFTNQIQTRFGSTTEHAAEMFNESSGGGGGEDDESFHQNMMVVGPWGTTTTTMATTDSSLRCVFPCEPNERPSQGLSLSLSSSNPSSIGLQSFELRQQHQSSFPIFHLRNSRFLIPTQELLYEFCSLGITNNINHSSSSPKQKHGSSSTTFSLQSLDFMDLQKRKTKLFSMLEEVERRYRHYCEQMKAVVASFEAVAGNGAARVYSALASKAMSRHFRSLKDGIVGQIQATRKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFNQISIMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQEKEIDNSFNNMNNNANNSFDGVGDFDDEIDGHRSIVTRLEDQKPTPDQLLRIDSECLSSIISNNTEKNDSRTMKTLQNHHLHENHNHTFGRVVSDAFGTVELDFSSYNHHTGSGGVTYPNNNNNNQHFNNGNGGGVSLTLGLQQHAAAGNGNGGVSIAFSPAAAAAQSSLFFTRDHMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2349830 2352926 - CePI673135_01g002380.1 Cec01g0238 193455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0238 595 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 94 399 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec01g0238 595 SMART HOX_1 311 375 IPR001356 GO:0003677(InterPro)
Cec01g0238 595 Pfam Associated with HOX 142 258 IPR006563 -
Cec01g0238 595 Coils Coil 378 398 - -
Cec01g0238 595 CDD homeodomain 311 372 IPR001356 GO:0003677(InterPro)
Cec01g0238 595 FunFam BEL1-like homeodomain protein 4 314 376 - -
Cec01g0238 595 SMART prehox3 136 260 IPR006563 -
Cec01g0238 595 SUPERFAMILY Homeodomain-like 312 377 IPR009057 -
Cec01g0238 595 Gene3D - 314 376 - -
Cec01g0238 595 ProSiteProfiles 'Homeobox' domain profile. 308 371 IPR001356 GO:0003677(InterPro)
Cec01g0238 595 Pfam Homeobox KN domain 328 367 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0238 Cec-Chr1:2349830 Cec02g1362 Cec-Chr2:30712336 2.00E-76 dispersed
Cec01g0238 Cec-Chr1:2349830 Cec10g1845 Cec-Chr10:33299423 8.30E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28837 PF07526 POX 5.90E-41 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0238 - - - 0.0