Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0242 ATGGGCTTCCCTGCAAGCTACACTGAGCTTCTTCTCCCTAAGCTCGTCATCCACGTATTCTCCTTCCTCGGCTTCCTCCGGAAGCTTATCTCCCTCCTCTTCCGCCTCCTTGGCCTCCAAGATTTCCTCGAACCCGACATTCCTTGGCCCAATCACCCCGATTCCTTCCCCACCGGACCCTTCGCCGACCTCGATCCTCTCTCCGCTGCCGTTCTCCGTGAGATTCTCCCAGTCATCAAGTTTTCCGAGCTTCTGGATCCGCCGGAGAGCTGCGCTGTGTGCCTCTACGAGTTCGAGGCCGAAGATGAGATCCGCCGCCTTGCTAAGTGCCGTCACATCTTCCACCGTGGATGCCTCGATCGGTGGATCGGTTACGGTCAGAGAACTTGCCCGCTCTGCCGGACGGTGTTTATTCCGCCCGATTTGCGGAGTGGTGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTTGAAGCTCTCCTCAGTGATTCTTCATCTTCAAGTCTTCTCGCTGCTGGTTTGTAG 534 55.62 MGFPASYTELLLPKLVIHVFSFLGFLRKLISLLFRLLGLQDFLEPDIPWPNHPDSFPTGPFADLDPLSAAVLREILPVIKFSELLDPPESCAVCLYEFEAEDEIRRLAKCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRSGGCNFDDRLWEDSEIFEALLSDSSSSSLLAAGL 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2404840 2405373 + CePI673135_01g002420.1 Cec01g0242 193459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0242 177 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Cec01g0242 177 PANTHER RING ZINC FINGER PROTEIN-RELATED 7 141 - -
Cec01g0242 177 Pfam Ring finger domain 90 134 IPR001841 -
Cec01g0242 177 SMART ring_2 91 133 IPR001841 -
Cec01g0242 177 SUPERFAMILY RING/U-box 72 140 - -
Cec01g0242 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 137 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0242 Cec-Chr1:2404840 Cec03g0149 Cec-Chr3:1454026 4.00E-09 dispersed
Cec01g0242 Cec-Chr1:2404840 Cec05g0168 Cec-Chr5:1415185 5.50E-35 wgd
Cec01g0242 Cec-Chr1:2404840 Cec06g0358 Cec-Chr6:4119039 3.00E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0242 K16281 - csv:101215533 297.745