Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0244 ATGAGATCCAAGCCGGTTCCTGAACCGTCGGCCGCGTTCTTCGTCCATGGATTCCTTTTCATCACTCTCTTTCGCATAAATCAATCGATTCTCAATCACACAACAGCCTCTGCATCTCATTTTCAAGCTATGGGACACGGTGACAAAGGAAGACCCAGCAAAAAACCTAAATTCGGCAAGGAGGATTACAAGAAAGCTTTTGAAGAAGATGATGTCTACCATCTTGACGATCTTGACGACGATGATCCCAATGGTGATAAAGAAGGAGGCAAGAGAGATTTCAGCAAATTGGAGTTGAAACCTGACCATGCTAATCGGCCCTTATGGGCTTGTGCTGATGGTCGGATATTCCTTGAAACTTTCTCACCATTGTACAAACAGGCATATGATTTCCTTATTGCAATTGCGGAACCAGTTTGCAGGCCAGAATCAATGCACGAGTACAACCTCACTCCACATTCTTTGTATGCTGCGGTGTCGGTTGGTTTGGAGACAGAAACAATTATCGCAGTTCTGAGTAAGCTGTCTAAGGCCAAACTTCCCAAGGAGATGATTGATTTCATTTATGCTTCTACTGCCAACTATGGCAAGGTGAAGCTTGTCCTTAAAAAGAACCGATATCTTGTGGAATCCCCATTTCCAGAGGTGTTGCAGAAATTGCTGAAGGATGAGGTTATAGGCAGAGCCAGAATTAGTCCTGAGGATTCTCGTGGAAATGGTGAGTTTACAATTAGTAAAACAGCGGGTGAACTTGGCAGTCGCCATGAAGGATTGCTTAATGAAGCAGAAGCTGCAGCTGCAGCTGAGGAAAGAGAAACTCATTCATTTGAAATTGACCCATCACAAGTTGAAAATGTTAAACAGCGCTGCCTGCCCAATGCCTTAAATTATCCCATGTTGGAAGAGTATGACTTCAGAAATGACACTATCAATCCAGACTTGGATATGGAACTGAAACCACAGGCTCAGCCTAGGCCGTATCAGGAAAAGAGTCTTAGCAAAATGTTTGGAAATGGTAGAGCAAGATCTGGCATTATTGTACTTCCTTGTGGAGCTGGGAAGTCTCTGGTCGGCGTTTCTGCAGCCAGTCGTATCCGGAAAAGCTGTCTATGTTTAGCTACAAATGCTGTATCAGTGGATCAGTGGGCTTTTCAGTTTAAGCTCTGGTCTACCATTCGAGATGATCAAATTTGTCGGTTCACGTCAGATAGTAAAGAAAGATTTCGAGGAAATGCGGGGGTGGTTGTTACAACCTATAACATGGTTGCTTTTGGTGGTAAAAGATCTGAAGAATCTGAAAAGATTATTGAAGAAATCAGAAACAGAGAATGGGGACTACTTCTCATGGACGAGGTGCACGTGGTTCCTGCTCACATGTTTCGTAAGGTTATCAGCCTGACTAAGTCTCACTGCAAGCTTGGGCTCACTGCCACACTTGTGAGAGAAGACGAAAGAATTACAGATCTAAATTTTCTTATTGGTCCCAAGTTGTATGAAGCCAACTGGTTGGATCTTGTGAAAGGAGGATTTATTGCAAATGTGCAGTGTGCTGAAGTTTGGTGTCCTATGACAAAGGAGTTTTTTGCTGAATATCTGAAGAAAGAGAACTCAAAGAAAAAGCAGGCTCTTTATGTAATGAACCCTAATAAGTTCAGGGCGTGTGAGTTTCTCATACGGTTTCATGAACAGCAGCGTGGTGATAAGATAATTGTTTTCGCTGACAATCTTTTTGCGCTTACGGAGTATGCAATGAAGCTTCGTAAACCTATGATCTATGGTGCAACAAGTCATATTGAGAGGACAAAAATTCTTGAAGCATTCAAAACTAGTCGTGATGTGAATACCGTTTTCCTTTCAAAGGTGGGTGATAACTCTATTGATATTCCTGAGGCAAATGTGATTATTCAGATATCATCACATGCGGGTTCAAGACGTCAAGAAGCCCAACGTCTGGGTCGTATTCTTAGGGCCAAGGGTAAACATCAGGACAGGATGGCTGGGGGCAAAGAGGAGTATAATGCCTTTTTCTATTCACTTGTTTCTACTGATACACAGGAAATGTACTATTCAACTAAACGACAACAGTTTTTGATCGATCAAGGTTATAGCTTTAAGGTAATTACAAGCTTGCCACCAGCAGATGCGGGAGCTGATTTGAGCTATCATCGTCTTGATGATCAGTTGGCACTTCTTGGGAAGGTACTGAATGCAGGCGATGATATGGTAGGATTGGAGCAGTTAGAAGATGATGCAGACCAAATTGCACTCGATAAGGCTCGACGTTCAATGGGATCCATGAGTGCAATGTCGGGAGCAAATGGCATGGTTTACATGGAGTATAGCACTGGACGGAAACTCGCGGGTCAAGGGCAGCTTAAGAGCAAGCCAAAAGACCCGGCGAAGAGACATCATTTGTTCAAAAAACGGTTTGCCTGA 2436 43.23 MRSKPVPEPSAAFFVHGFLFITLFRINQSILNHTTASASHFQAMGHGDKGRPSKKPKFGKEDYKKAFEEDDVYHLDDLDDDDPNGDKEGGKRDFSKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLSKLSKAKLPKEMIDFIYASTANYGKVKLVLKKNRYLVESPFPEVLQKLLKDEVIGRARISPEDSRGNGEFTISKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADAGADLSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDKARRSMGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2436805 2445271 - CePI673135_01g002440.1 Cec01g0244 193461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0244 811 CDD DEXHc_XPB 316 485 - -
Cec01g0244 811 Gene3D - 506 746 IPR027417 -
Cec01g0244 811 PRINTS Xeroderma pigmentosum group B protein signature 670 693 - -
Cec01g0244 811 PRINTS Xeroderma pigmentosum group B protein signature 567 589 - -
Cec01g0244 811 PRINTS Xeroderma pigmentosum group B protein signature 192 211 - -
Cec01g0244 811 PRINTS Xeroderma pigmentosum group B protein signature 761 780 - -
Cec01g0244 811 PRINTS Xeroderma pigmentosum group B protein signature 106 126 - -
Cec01g0244 811 PRINTS Xeroderma pigmentosum group B protein signature 614 632 - -
Cec01g0244 811 PRINTS Xeroderma pigmentosum group B protein signature 305 331 - -
Cec01g0244 811 PRINTS Xeroderma pigmentosum group B protein signature 336 358 - -
Cec01g0244 811 PRINTS Xeroderma pigmentosum group B protein signature 633 658 - -
Cec01g0244 811 PRINTS Xeroderma pigmentosum group B protein signature 443 463 - -
Cec01g0244 811 PRINTS Xeroderma pigmentosum group B protein signature 547 562 - -
Cec01g0244 811 PRINTS Xeroderma pigmentosum group B protein signature 509 531 - -
Cec01g0244 811 MobiDBLite consensus disorder prediction 75 94 - -
Cec01g0244 811 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 335 497 IPR014001 -
Cec01g0244 811 MobiDBLite consensus disorder prediction 787 811 - -
Cec01g0244 811 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 552 718 IPR001650 -
Cec01g0244 811 Pfam Helicase conserved C-terminal domain 108 230 IPR032830 -
Cec01g0244 811 SMART helicmild6 580 658 IPR001650 -
Cec01g0244 811 FunFam Putative DNA repair helicase rad25 506 748 - -
Cec01g0244 811 Gene3D - 314 505 IPR027417 -
Cec01g0244 811 SMART ultradead3 320 501 IPR014001 -
Cec01g0244 811 PANTHER RAD25/XP-B DNA REPAIR HELICASE 88 780 IPR050615 GO:0000112(PANTHER)|GO:0005675(PANTHER)|GO:0006367(PANTHER)|GO:0043138(PANTHER)|GO:0097550(PANTHER)
Cec01g0244 811 Pfam Type III restriction enzyme, res subunit 323 480 IPR006935 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0016787(InterPro)
Cec01g0244 811 Pfam ERCC3/RAD25/XPB C-terminal helicase 505 751 IPR032438 -
Cec01g0244 811 CDD SF2_C_XPB 516 680 - -
Cec01g0244 811 MobiDBLite consensus disorder prediction 797 811 - -
Cec01g0244 811 FunFam Probable DNA repair helicase RAD25 314 505 - -
Cec01g0244 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 499 IPR027417 -
Cec01g0244 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 748 IPR027417 -
Cec01g0244 811 NCBIfam DNA repair helicase rad25 93 808 IPR001161 GO:0003678(InterPro)|GO:0006289(InterPro)|GO:0006367(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0244 K10843 - - csv:101215293 1448.34
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g19 . . . . . . . Bma14g00606 . . . Cma15g01241 . Car15g01118 . . . . . . . . . . . . . . . . . Cone8ag0288 Cone12ag0294 . . . Csa05g00262 Chy09g01245 . . . . . . Bpe11g00661 . . . . Cmo15g01306 . . . . . Cpe13g00144 Bhi12g00288 . . Lac11g2069 Hepe06g1526 . Lcy12g1631 Cla01g00247 Cam01g0251 Cec01g0244 Cco01g0257 Clacu01g0249 Cmu01g0239 Cre09g2269 Lsi09g00237 . . Cme09g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011686 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30