Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0265 ATGAGAGAGAATAGTGAGATAGAGCGAGCAAAACGAACAAGACAAAGAGCTAAAGCAAGAGCAACGAGTGAGAAAAAAGTATTTGTTGATGTCAGCAAAAGGCGGCAGGGGTTAGGGAGTGCGAGAGAAGGCGTGGCGAAATACTTCTTGCCGGGTCCACATCCTATAAAAGCCCTTCCTCGGCTCTACCCTCTTTCTTCCCCGCGAAAACACAAATTCCATTTCTTCTCAATTGGAGGGACGAAAATACCAGTCACAGAGAGATATTCGACGACTGAAAGTGTCAGCCATTTACACGCAACCGCCGCCCATTTCACGATGGGTAACCGAAGATTTGCGCAGGTTTCCACTAGCGATGAGGAAGATGAAGTACCAGCAACAAAGCAGCAATCCTCCAATTCAGACGACAACTTCCCAATTCGCAGGAAGAGGAAGAAGATGAAGCTTCAAGAGGAGGAGGAGGAGGAGGCGGAAGGGGATGAGAAGCATCGCAGGAGTAGAAAAAGTAGTAACAAGGGAGAGAAGGAGGTGGAAGCGTCCAAACAACGGCAGGCGGAAGATGAAGATGAGGATGATCAGTCCCAAGAGGATGCCAAGCCGATTGGGGATGTTGTTAGGGTTTCTGGAAAAGGAAGAGGAAGGAAGAATCATTACAATGCGTTTGAATATGATGGCAACAGATATGATCTTGAGGATCCGGTACTTCTAGTTCCTGAGGACAAGGATCAAAAACCTTATGTGGCAATTATAAAGGATATTACTCAGAACAAAGATGGCATGATGGTCACTGGGCAGTGGTTTTACCGTCCTGAAGAAGCTGAAAAAAAGGGTGGTGGAAGTTGGCAATCACATGATACTCGAGAGCTGTTTTATAGTTTCCACCGTGACCAGGTTCCTGCAGAATCTGTAATGCACAAATGTGTTGTGCATTTTGTTCCATTGCATAAGCAACTTCCAATTCGGAAGCAACATCCTGGATTCATTGTGCGAAAAGTGTATGACACAGTTGAAAGAAAACTTTGGAAGCTAACTGATAAGGACTACGAAGATTCCAAGCAGCAGGAAATTGATGAACTTGTCAAGAAGACTATGTCACGGTTGGGAGATCTCCCTGATATTGAGCCTGAAGATGCCCCAGCTGATCAAGAAGATCAGTTGAAAACTAAAAGGAGTTTCAAAAGGAAGAATATATCTCCTCTTGATGTTACGAGAGATGAATCAGAAACAACCAGATCTGATCATGGCACAAAAGTTGAAACACCAGGAAGCTGTACTACAAATCGATCAGAGTACTACTCCATTTTAGAAATATTTGATGTTCTAACAGGTGAAACTCATCGAGATAGATGGTTGGAAAAACTTTTGGAGGGGGTTCAGTACATATGTCATTCTCCTGAAAAAACACGTGAAAGTGATATAGGAAAAACTGCTGCTAATGGTGTCAACCTTGAAAATAAAAGTCCAGAATTGTCAATTGCAGCAGAGAACAATGCTAAGAGTGGCAAGTCTTTTCTCTGGCCAGATGCAGCTGTTCCGGCAATAACTGCTCTTGAGAAGGTGTGCAATGATGCTCTATCTGCTGATTTTCAGAAATATAACCAAAAAATGCGGCAATTGGTGTTCAATCTCAAGAATACTCGTTTACTAGCTCAACGGCTGTTAAATGGAGAGTTGGAACCATCCAAAATCTTGAATATGTCACCCAATGAGCTCAAGGAAGGATTGACTGCTGAGGAGTCGGCAGCAACTAAAGAGCCTGATGAGTCTGAGCGTATGCAGATGACAGATGCTCGGTGTTCAAGGTGCACAGAATGTAAAGTGGGTGTCAGGGACATCATCCAAACAGGACATGGACAACGATATAAGTTGGAGTGCATTGCCTGTGGTCATTCTTGGTATGCCTCTAGGGATGAACTATCCATGCTGACAATAGATGCGGCAACTAATTCTACCAAGAGTGTTGGAACCGCACCATGGGCAACTGCTAAATTTGAAGATGTAGAGAAGAGTCTACTCAGTCCTCGTGAATCAGAAAAAGCTGCCGAGGACCTCTTCAAGAAGACGAGTGAAGCGTACATTCCCGTAGTGGATAGTCAGAAATCTAACAAGTCTAAAAAGGAAGATAATACAGAACGTGCCAAAAATACACAAGTTAAGAGTAAAGGTTTTGCAAAGAGGTCCTGCTGA 2187 43.71 MRENSEIERAKRTRQRAKARATSEKKVFVDVSKRRQGLGSAREGVAKYFLPGPHPIKALPRLYPLSSPRKHKFHFFSIGGTKIPVTERYSTTESVSHLHATAAHFTMGNRRFAQVSTSDEEDEVPATKQQSSNSDDNFPIRRKRKKMKLQEEEEEEAEGDEKHRRSRKSSNKGEKEVEASKQRQAEDEDEDDQSQEDAKPIGDVVRVSGKGRGRKNHYNAFEYDGNRYDLEDPVLLVPEDKDQKPYVAIIKDITQNKDGMMVTGQWFYRPEEAEKKGGGSWQSHDTRELFYSFHRDQVPAESVMHKCVVHFVPLHKQLPIRKQHPGFIVRKVYDTVERKLWKLTDKDYEDSKQQEIDELVKKTMSRLGDLPDIEPEDAPADQEDQLKTKRSFKRKNISPLDVTRDESETTRSDHGTKVETPGSCTTNRSEYYSILEIFDVLTGETHRDRWLEKLLEGVQYICHSPEKTRESDIGKTAANGVNLENKSPELSIAAENNAKSGKSFLWPDAAVPAITALEKVCNDALSADFQKYNQKMRQLVFNLKNTRLLAQRLLNGELEPSKILNMSPNELKEGLTAEESAATKEPDESERMQMTDARCSRCTECKVGVRDIIQTGHGQRYKLECIACGHSWYASRDELSMLTIDAATNSTKSVGTAPWATAKFEDVEKSLLSPRESEKAAEDLFKKTSEAYIPVVDSQKSNKSKKEDNTERAKNTQVKSKGFAKRSC 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2643000 2652211 - CePI673135_01g002650.1 Cec01g0265 193482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0265 728 SMART mid_6 466 581 IPR003618 GO:0006351(InterPro)
Cec01g0265 728 SMART BAH_4 226 344 IPR001025 GO:0003682(InterPro)
Cec01g0265 728 Pfam Transcription factor S-II (TFIIS), central domain 442 585 IPR003618 GO:0006351(InterPro)
Cec01g0265 728 CDD BAH_plant_3 208 353 - -
Cec01g0265 728 ProSiteProfiles BAH domain profile. 226 344 IPR001025 GO:0003682(InterPro)
Cec01g0265 728 SUPERFAMILY Elongation factor TFIIS domain 2 509 572 IPR036575 GO:0006351(InterPro)
Cec01g0265 728 MobiDBLite consensus disorder prediction 137 188 - -
Cec01g0265 728 MobiDBLite consensus disorder prediction 369 423 - -
Cec01g0265 728 Coils Coil 7 27 - -
Cec01g0265 728 MobiDBLite consensus disorder prediction 696 728 - -
Cec01g0265 728 MobiDBLite consensus disorder prediction 700 715 - -
Cec01g0265 728 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 107 714 - -
Cec01g0265 728 MobiDBLite consensus disorder prediction 113 215 - -
Cec01g0265 728 MobiDBLite consensus disorder prediction 1 22 - -
Cec01g0265 728 Gene3D - 440 573 IPR036575 GO:0006351(InterPro)
Cec01g0265 728 MobiDBLite consensus disorder prediction 380 415 - -
Cec01g0265 728 Gene3D - 209 431 IPR043151 -
Cec01g0265 728 Pfam BAH domain 228 343 IPR001025 GO:0003682(InterPro)
Cec01g0265 728 Coils Coil 140 160 - -
Cec01g0265 728 ProSiteProfiles TFIIS central domain profile. 446 600 IPR003618 GO:0006351(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0265 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0265 Cec-Chr1:2643000 Cec10g1466 Cec-Chr10:29025686 7.10E-20 dispersed
Cec01g0265 Cec-Chr1:2643000 Cec06g1879 Cec-Chr6:32115329 7.60E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g322 . . . . . . . . . . Cma02g01453 Cma15g01226 Car02g01219 Car15g01106 . . Cpe05g00334 . . . . . . . . . . . . . . Cone8ag0305 . Cone6ag0779 Cone9ag0784 . Csa05g00281 Chy09g01228 . . . . . . . . . . Cmo02g01488 Cmo15g01291 . . . . . Cpe13g00157 Bhi12g00260 . . . . . . Cla01g00265 Cam01g0272 Cec01g0265 Cco01g0280 Clacu01g0272 Cmu01g0260 Cre09g2248 Lsi09g00260 . . Cme09g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006093 0 1 1 0 0 1 1 1 1 1 1 1 2 1 1 1 1 4 3 1 1 1 1 1 1 1 1 4 4 1 39