Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0271 ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGCTCTGCTTCTTATTACATACATAGGGGAGGAGGAGTTGGTGGCTCTGGATCAGGGCTGCCTACGGCTGGATCACATGCCTCCCCCGTATTCCGGCCGATGGCTAACCAGGGTGTTTTGTCTCACTCAAATCTCAGAGGCAACTCAGTTGGATCAACATATGCTGTTGAGCCATCACATTCGAATTATCTTCGTGGGATGGGTATCAATGTCTCAGCTGGAGTGAACTCTAGTGAACCTGTAAAGAAGAAGAGAGGGAGACCCCGGAAATATGCCCCAGATGGGCAGGTCTCTTTGGGTTTGTCTCCCATGTCTGCTGGTTCTAAGCTCACTCCGGGTTCGAATTCGTCAACCCCCAGACGACGACGAGGGCGGCCACCCGGTTCTGGAAGGAAACAACAATTAGCTCTCCTTGGTGATTGGATGAACAATTCAGCTGGACTAGCCTTTGCTCCACATGTTATTCACGTTGGAGCTGGAGAAGACATTGTAGCAAAAGTGTTGTCATTCGCACAGCAGAGGCCAAGGGCTCTTTGCATATTGTCTGGCAATGGGACTGTTTCTTCTGTAACACTACGTCAGCCTGCATCTACTGGCGTGAGCGTCACTTACGAGGGTCATTTCCAGATATTGTGCTTATCTGGTTCTTACTTGGTGGCTGAAGATGGTAGTCCTCGAAGTAGGACAGGAGGTATTAGTGTTTCTCTCTCTAGTCCTGATGGTCATGTCATTGGTGGCGGTGTTGCCGTTCTTATGGCAGCTGGCCCTGTTCAGGTAGTTGTATGTAGTTTTGTTTATGGTGCAAAGATAAAAAACAAGCAGGTGGCTGGTTCGAAAAGCAATGATGCTTCTGGAAATGAGCACCACGACAATTTGGTTTCACCCACGGGTGCCCCATCTGCCCAAACCTACAATCCATCTCCAATTGGTGTTTGGCCTGGTTCCCGTTCAGTCGATATTGATGCTAACATATGGTATGAGACTTCATTTCAAGTTTCTCAAGTCAATGTTGATTTTATTGGGCAGAGTTTCTGGTTTTTGGAGGGGTATCTCATTCCAATTTCCTTTTCAAGGGCTTCTGCTCGAGATGAAAAGGATTATATGGTGGTGTTGGTTAGAAACAGAACTGGAATGGAATAG 1173 47.83 MDGREGMALSGGSASYYIHRGGGVGGSGSGLPTAGSHASPVFRPMANQGVLSHSNLRGNSVGSTYAVEPSHSNYLRGMGINVSAGVNSSEPVKKKRGRPRKYAPDGQVSLGLSPMSAGSKLTPGSNSSTPRRRRGRPPGSGRKQQLALLGDWMNNSAGLAFAPHVIHVGAGEDIVAKVLSFAQQRPRALCILSGNGTVSSVTLRQPASTGVSVTYEGHFQILCLSGSYLVAEDGSPRSRTGGISVSLSSPDGHVIGGGVAVLMAAGPVQVVVCSFVYGAKIKNKQVAGSKSNDASGNEHHDNLVSPTGAPSAQTYNPSPIGVWPGSRSVDIDANIWYETSFQVSQVNVDFIGQSFWFLEGYLIPISFSRASARDEKDYMVVLVRNRTGME 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2730179 2736378 + CePI673135_01g002710.1 Cec01g0271 193488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0271 390 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 73 295 IPR039605 GO:0003680(InterPro)
Cec01g0271 390 MobiDBLite consensus disorder prediction 85 143 - -
Cec01g0271 390 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 276 - -
Cec01g0271 390 Gene3D - 163 291 - -
Cec01g0271 390 ProSiteProfiles PPC domain profile profile. 158 299 IPR005175 -
Cec01g0271 390 MobiDBLite consensus disorder prediction 288 317 - -
Cec01g0271 390 MobiDBLite consensus disorder prediction 112 133 - -
Cec01g0271 390 CDD DUF296 163 275 IPR005175 -
Cec01g0271 390 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 275 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0271 Cec-Chr1:2730179 Cec08g0955 Cec-Chr8:21395096 1.10E-51 dispersed
Cec01g0271 Cec-Chr1:2730179 Cec06g0394 Cec-Chr6:4428535 7.30E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0271 - - - 0.0