Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0278 ATGTCAACGCTGCCAGAAAGATCATTTGCCATCTTCTACCGGTTGGAGCTTTTTGCAGAACTTCTTTCAGCCTTGCTGTTTCTTGCTTGTAAAATGAATTTGGAGAGTCAAAACAAGAAGAAAGAGTATGCTGCTGATATTTTCTCCATAAAGGAGGCCCGAATGCGTATTCAACCTTTCATCCATCAAACCCCAGTTTTGTCTTCTGAGACTATTAATGCTGCTTCAGGAAAACAACTTTTCTTCAAATGTGAATGTTTCCAGAAGGGTGGAGCATTTAAATTCAGAGGTGCCTGCAATGCTATATTATCACTTGATGAGGACCAGGCTGCTAAAGGGGTTGTGACACATAGCAGTGGCAACCATGCTGCAGCTTTGTCTTTGGCTGCAAAACTGCGAGGAATCCCTGCATATATAGTTATACCAGAAAGTGCTCCAAAATGTAAAGTTGAAAATGTGATACGTTATGGTGGTCAGGTTATTTGGAGCAAAGACACAATACAGTCGAGGGAAACGACTGCCATGAAGGTTATGCAAGAAACTGGTGCACTTCTCATACACCCATATAATGATGGGCGCATAATGAGTGGGCAAGGTACCATCTCATTGGAGCTTCTGGAACAAGTCCCACAATTAGACACTTTAATAGTTCCAATAAGTGGCGGTGGTTTGATATCAGGAATTTCAGTGGCGGCAAAAGCCATCAATCCTGCCATCCGGATTTTTGCTGCAGAACCTAAGGGAGCTAATGATGCAGCCATGTCAAAAGCCGCTGGTAAGATAGTAAAACTGGCAGAGACCACCACCATTGCCGATGGTCTTCGAGCTTTTCTCGGTGACCTTACCTGGCCAATAGTAAGAGATTTGGTGGATGATGTAGTAACTGTGGAGGACACTGAGATAGTTGGAGCAATGAGACTTTGTCTTGAAGTGCTGAAAGTTGTTGTGGAACCTAGTGGGGCAATAGGTCTTGCTGCTGTTCTCTCTGATAGTTTCAAGCAAAACCCTTCATGGAAAGATTGCAACTGCATTGGCATTATACTTTCAGGAGGTAATGTTGATCTTGGTATGCTATGGAATTCATACAAGAAATGA 1095 43.01 MSTLPERSFAIFYRLELFAELLSALLFLACKMNLESQNKKKEYAADIFSIKEARMRIQPFIHQTPVLSSETINAASGKQLFFKCECFQKGGAFKFRGACNAILSLDEDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPESAPKCKVENVIRYGGQVIWSKDTIQSRETTAMKVMQETGALLIHPYNDGRIMSGQGTISLELLEQVPQLDTLIVPISGGGLISGISVAAKAINPAIRIFAAEPKGANDAAMSKAAGKIVKLAETTTIADGLRAFLGDLTWPIVRDLVDDVVTVEDTEIVGAMRLCLEVLKVVVEPSGAIGLAAVLSDSFKQNPSWKDCNCIGIILSGGNVDLGMLWNSYKK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2812028 2817899 + CePI673135_01g002780.1 Cec01g0278 193495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0278 364 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 85 98 IPR000634 GO:0006520(InterPro)|GO:0030170(InterPro)
Cec01g0278 364 Gene3D - 56 354 IPR036052 -
Cec01g0278 364 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 39 356 - GO:0000287(PANTHER)|GO:0003941(PANTHER)|GO:0005524(PANTHER)|GO:0008721(PANTHER)|GO:0018114(PANTHER)|GO:0030170(PANTHER)|GO:0030378(PANTHER)|GO:0070179(PANTHER)
Cec01g0278 364 FunFam L-threonine dehydratase catabolic TdcB 161 354 - -
Cec01g0278 364 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 47 357 IPR036052 -
Cec01g0278 364 CDD Thr-dehyd 49 354 - -
Cec01g0278 364 Gene3D - 93 189 IPR036052 -
Cec01g0278 364 Pfam Pyridoxal-phosphate dependent enzyme 57 328 IPR001926 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0278 K12235 - - csv:101217208 586.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0278 Cec-Chr1:2812028 Cec04g1109 Cec-Chr4:30656717 7.60E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g336 . . . . . . . Bma14g00071 . . Cma02g01464 . Car02g01229 . . . Cpe05g00325 . . . . . . . . . . . . . . . . . Cone9ag0773 . Csa05g00293 Chy09g01213 . Blo03g00336 . . . . . . . . Cmo02g01499 . . . . . . . Bhi12g00238 . . Lac11g2107 Hepe06g1557 . Lcy12g1663 Cla01g00275 Cam01g0285 Cec01g0278 Cco01g0291 Clacu01g0284 Cmu01g0271 Cre09g2237 Lsi09g00272 . . Cme09g01750
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013496 1 2 1 2 1 1 0 0 1 1 0 1 0 1 1 0 0 2 1 1 1 1 0 1 1 0 1 1 2 1 26