Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0295 ATGGGGAGCTTAGAACGAACGATTCTCGTCACTGGTGGGGCTGGATTCATTGGCACCCACACTGTTGTTCAGCTTCTTAAAGAAGGGTTTAGGGTTTCCATTATCGATAATCTTGATAATTCGGTTATTGAAGCTGTTGATCGGGTTAGGGAATTGGTCGGCCCTAAACTTTCACAGAAACTTGAGTTTAATTTGGGAGACCTGAGAAAGAAGGAGGACATAGAGAATTTGTTTTCTAAGACGAGATTTGATGCTGTTATCCATTTTGCTGGTCTTAAAGCTGTTGGGGAGAGTGTTGCTTTCCCACGTAGATATTTCGACAATAATCTTGTTGGAACCATCAATCTCTATGAGGTTATGGCAAAATATGATTGCAAGAAGATGGTTTTCTCGTCCTCCGCAACTGTTTATGGTCAGCCTGAGAAAATACCATGTGTTGAGGATTTTGAATTAGTGGCATTGAATCCTTACGGTCGGACAAAGCTTTTCTTGGAAGAGATTGCTCGAGACATTCAAAAAGCAGAGCCCGGTTGGGGAATCATTTTGTTGAGATACTTCAACCCTGTTGGGGCTCATGAGAGTGGTCAAATTGGTGAAGATCCAAAGGGTATCCCTAACAATCTCATGCCTTACATTCAGCAAGTCGCAGTTGGTAGACTACCAGAGCTCAATGTATATGGTCATGACTATCCAACAAAAGACGGCAGCGCTGTTCGAGACTATATCCATGTCATGGACCTAGCTGATGGCCACATTGCTGCTCTTCGAAAACTTTTTACGAACGAAGATATAGGGTGCACTGCCTACAACTTGGGGACTGGACAGGGCACATCCGTGCTAGAAATGGTTGCAGCCTTTGAGAAGGCCTCGGGCAAGAAAATCCCTACGAAACTATGCCCGAGGAGGCCCGGTGATGCAACGGCGGTGTATGCATCAACAGAGAAAGCCAAGAAAGAACTCGGTTGGACGGCAAACTATGGCATAGAGGAAATGTTGGCGGAGGTCATTCTCAGGCGCCGCGCTCTTCTTTACTCCTCCGATTCCGATTCCAGATTCTCCCTCAGATTGAGGCGAGAGTCGTTGAAAATCGGAGATCCTTGCGGTTCAGATCTGGGAGAAGAGGCGATGGCGCCGTCGCCGGCGGAACCGATCGGCGATTCTGGAACAGGAGATTCTCAGAGATCTATACCGACGCCGTTTCTAACGAAAACTTATCAATTGGTTGATGATCCGGCTGTGGACGATCTCATCTCGTGGAATGAAGATGGATCTACCTTCATAGTTTGGCGACCGGCTGAATTTGCTCGAGATTTACTTCCTAAATACTTTAAGCACAATAATTTCTCTAGTTTCGTCCGTCAACTCAACACTTACGGGTTCCGAAAGGTTGTGCCGGACCGATGGGAATTTGCGAACGATTGTTTCCGGAGAGGTGAGAAAGGACTTCTACGAGACATTCAGCGGCGTAAAGTGGCGCTGTCGGTAACAACAACAACGCCGGCTACTCCAGCTGCGGTGGCTGTGCCAGTGACGGTGGCGGCGTCTCCGGCAGTGTTGGCTCACGTGATATCACCGGCGAACTCTGCAGAAGAGCAAGTTACGTCCTCGAACTCATCGCCCATGGCATTTCAGCGAAGTACGAGCTGCACCACGACGCCGGAACTTGTGAGAGAGAATGAGCGGTTAAGGAAGGAGAATATGCAACTAAGTCACGAGTTGACCCAGTTGAAAGGACTCTGTAACAGCATACTATCGCTGATGACGAATTACGCATCAGGTCACCATCACCAGTTGGAGTCGGTGAGCGTCCGAGACGGGAAGGCACTAGAGCTCTTACCGGCGAGGCAGGTGATGGAAGACGAAGGCGCCGTCAGCGACGGGGCTCATGAGGTGAGACTGAAGATGGAGGAGACGATGACAGCGGCAGCGGCGGCGGCAGGAATGACGCCGAAACTGTTCGGGGTATCGATCGGAGTGAAGCGGATGAGGAGAGAGGAAGAAGACGAGGAAGAGATGGGGCAGAATCATGTACAGTCGGAAGAAGGGGAGACGGGGTCAGAGATCAAAGCTGAACCGTTGGATGAAAACTCTGAAAATCCAGAGGGATCCGCGTCGCCATGGCTTGAACTCGGAAATCAAGGCTCCTGA 2148 49.49 MGSLERTILVTGGAGFIGTHTVVQLLKEGFRVSIIDNLDNSVIEAVDRVRELVGPKLSQKLEFNLGDLRKKEDIENLFSKTRFDAVIHFAGLKAVGESVAFPRRYFDNNLVGTINLYEVMAKYDCKKMVFSSSATVYGQPEKIPCVEDFELVALNPYGRTKLFLEEIARDIQKAEPGWGIILLRYFNPVGAHESGQIGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTKDGSAVRDYIHVMDLADGHIAALRKLFTNEDIGCTAYNLGTGQGTSVLEMVAAFEKASGKKIPTKLCPRRPGDATAVYASTEKAKKELGWTANYGIEEMLAEVILRRRALLYSSDSDSRFSLRLRRESLKIGDPCGSDLGEEAMAPSPAEPIGDSGTGDSQRSIPTPFLTKTYQLVDDPAVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRKVALSVTTTTPATPAAVAVPVTVAASPAVLAHVISPANSAEEQVTSSNSSPMAFQRSTSCTTTPELVRENERLRKENMQLSHELTQLKGLCNSILSLMTNYASGHHHQLESVSVRDGKALELLPARQVMEDEGAVSDGAHEVRLKMEETMTAAAAAAGMTPKLFGVSIGVKRMRREEEDEEEMGQNHVQSEEGETGSEIKAEPLDENSENPEGSASPWLELGNQGS 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2984746 2992175 + CePI673135_01g002950.1 Cec01g0295 193512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0295 715 SMART hsfneu3 396 489 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec01g0295 715 MobiDBLite consensus disorder prediction 530 551 - -
Cec01g0295 715 Pfam HSF-type DNA-binding 400 489 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec01g0295 715 ProSitePatterns HSF-type DNA-binding domain signature. 439 463 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec01g0295 715 Gene3D - 197 335 - -
Cec01g0295 715 MobiDBLite consensus disorder prediction 367 395 - -
Cec01g0295 715 PRINTS Heat shock factor (HSF) domain signature 438 450 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec01g0295 715 PRINTS Heat shock factor (HSF) domain signature 400 423 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec01g0295 715 PRINTS Heat shock factor (HSF) domain signature 451 463 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec01g0295 715 MobiDBLite consensus disorder prediction 698 715 - -
Cec01g0295 715 CDD UDP_G4E_1_SDR_e 7 333 IPR005886 GO:0003978(InterPro)|GO:0006012(InterPro)
Cec01g0295 715 Pfam GDP-mannose 4,6 dehydratase 9 334 IPR016040 -
Cec01g0295 715 SUPERFAMILY Winged helix DNA-binding domain 397 489 IPR036390 -
Cec01g0295 715 MobiDBLite consensus disorder prediction 663 715 - -
Cec01g0295 715 FunFam Heat stress transcription factor B-4 392 490 - -
Cec01g0295 715 Coils Coil 559 579 - -
Cec01g0295 715 NCBIfam UDP-glucose 4-epimerase GalE 8 334 IPR005886 GO:0003978(InterPro)|GO:0006012(InterPro)
Cec01g0295 715 PANTHER UDP-GLUCOSE 4-EPIMERASE 6 333 - GO:0003978(PANTHER)|GO:0005829(PANTHER)|GO:0033499(PANTHER)
Cec01g0295 715 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 336 IPR036291 -
Cec01g0295 715 MobiDBLite consensus disorder prediction 663 696 - -
Cec01g0295 715 Gene3D - 8 279 - -
Cec01g0295 715 Gene3D - 392 490 IPR036388 -
Cec01g0295 715 FunFam UDP-glucose 4-epimerase 8 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0295 K01784 - - csv:101203400 646.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0295 Cec-Chr1:2984746 Cec07g1259 Cec-Chr7:28094946 1.10E-126 dispersed
Cec01g0295 Cec-Chr1:2984746 Cec05g2220 Cec-Chr5:33726865 8.80E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g620 . Blo15g00160 . . . Bpe07g00947 . . Cmo16g00141 Cmo18g01259 . Cma15g01203 . Car15g01090 Sed01g3914 . Cpe14g00115 Bhi01g01343 Tan01g0269 Cmetu06g2712 Lac11g2126 Hepe07g0173 Mch10g0169 . Cla01g00293 Cam01g0304 Cec01g0295 Cco01g0311 Clacu01g0304 Cmu01g0289 . . . . . . Csa05g00316 Chy09g01192 Cme06g00981 . . Bda06g00674 . . . . Bma12g01125 . . Cmo15g01268 Cma16g00136 Cma18g01236 Car16g00120 Car18g01140 Cpe09g00100 Cpe13g00172 Bhi12g00210 . . Lac11g2126 Hepe06g1576 . Lcy12g1687 . . . . . . . . Csa03g01695 Chy06g00930 Cme09g01727
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0572 . 37 237 HSF AT4G17750 59.6 2.3e-62 236.9
Cec09g0708 . 76 317 HSF AT4G17750 51.0 1.8e-59 227.3
Cec08g1768 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cec03g0671 . 13 158 HSF AT4G17750 56.1 3.8e-41 166.4
Cec01g0295 . 352 490 HSF AT4G17750 56.8 2.7e-39 160.2
Cec08g1659 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cec05g2220 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cec05g0572 . 38 242 HSF AT5G16820 57.0 3.6e-60 229.6
Cec07g0080 . 41 262 HSF AT5G16820 52.6 2.3e-59 226.9
Cec09g0708 . 77 289 HSF AT5G16820 54.0 5.3e-56 215.7
Cec08g1768 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Cec04g2104 . 62 244 HSF AT5G16820 50.3 1.5e-42 171.0
Cec03g0671 . 9 150 HSF AT5G16820 57.2 4.4e-42 169.5
Cec06g0919 . 10 176 HSF AT5G16820 51.6 5.7e-42 169.1
Cec02g1911 . 13 188 HSF AT5G16820 50.3 3.7e-41 166.4
Cec10g0148 . 13 515 HSF AT1G32330 53.0 1.1e-120 430.6
Cec05g0572 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Cec09g0708 . 65 285 HSF AT1G32330 51.8 9.7e-58 221.5
Cec07g0080 . 27 226 HSF AT1G32330 52.6 6.3e-57 218.8
Cec08g1768 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cec08g1659 . 20 117 HSF AT1G32330 72.4 2.9e-38 156.8
Cec05g2220 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
Cec07g0080 . 41 262 HSF AT3G02990 53.1 2.8e-62 236.5
Cec05g0572 . 38 241 HSF AT3G02990 57.6 1.8e-61 233.8
Cec09g0708 . 77 300 HSF AT3G02990 52.4 1.9e-58 223.8
Cec08g1768 . 43 242 HSF AT3G02990 51.7 5.7e-55 212.2
Cec06g0919 . 10 172 HSF AT3G02990 50.3 3.6e-41 166.4
Cec03g0671 . 9 158 HSF AT3G02990 54.3 1.4e-40 164.5
Cec05g0572 . 25 287 HSF AT2G26150 52.3 1.5e-68 256.9
Cec09g0708 . 65 284 HSF AT2G26150 54.3 5.0e-64 241.9
Cec10g0148 . 8 243 HSF AT2G26150 55.7 3.0e-61 232.6
Cec03g0671 . 5 156 HSF AT2G26150 51.3 2.3e-40 163.3
Cec02g1911 . 2 189 HSF AT4G18880 52.1 5.6e-51 198.7
Cec05g0355 . 6 462 HSF AT4G13980 52.6 8.1e-118 421.0
Cec02g1911 . 4 183 HSF AT4G13980 50.6 1.7e-43 174.1
Cec05g0572 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cec08g1768 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cec05g0572 . 26 354 HSF AT3G22830 50.1 1.8e-89 326.6
Cec07g0080 . 16 350 HSF AT3G22830 51.2 6.4e-87 318.2
Cec08g1768 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Cec10g0148 . 29 242 HSF AT3G22830 58.9 1.1e-62 237.7
Cec03g0671 . 13 158 HSF AT3G22830 52.0 1.9e-38 157.1
Cec09g0708 . 64 375 HSF AT3G51910 51.4 8.7e-72 267.3
Cec07g0080 . 26 322 HSF AT3G51910 52.2 1.1e-69 260.4
Cec08g1768 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Cec08g1768 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cec02g1911 . 5 140 HSF AT3G63350 56.6 3.8e-38 155.6
Cec11g0180 . 32 261 HSF AT5G54070 50.2 3.2e-52 202.6
Cec04g1370 . 46 334 HSF AT4G36990 52.4 1.0e-70 263.8
Cec05g0957 . 589 696 HSF AT4G36990 64.8 3.9e-38 155.6
Cec08g1659 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Cec01g0295 . 391 711 HSF AT4G11660 51.8 2.1e-79 293.1
Cec08g1659 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cec04g1370 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Cec03g1299 . 20 119 HSF AT4G11660 68.0 1.0e-38 157.9
Cec10g0148 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cec04g0460 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cec10g1593 . 14 222 HSF AT2G41690 55.3 1.0e-47 187.2
Cec08g1659 . 9 373 HSF AT1G46264 52.2 5.0e-88 321.6
Cec05g2220 . 1 239 HSF AT1G46264 63.8 6.3e-83 304.7
Cec10g0148 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Cec02g1911 . 5 115 HSF AT1G46264 63.1 5.2e-37 152.1
Cec10g1593 . 21 118 HSF AT1G46264 69.4 5.2e-37 152.1
Cec05g0572 . 37 237 HSF AT4G17750 59.6 2.3e-62 236.9
Cec09g0708 . 76 317 HSF AT4G17750 51.0 1.8e-59 227.3
Cec08g1768 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cec03g0671 . 13 158 HSF AT4G17750 56.1 3.8e-41 166.4
Cec01g0295 . 352 490 HSF AT4G17750 56.8 2.7e-39 160.2
Cec08g1659 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cec05g2220 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cec05g0572 . 38 242 HSF AT5G16820 57.0 3.6e-60 229.6
Cec07g0080 . 41 262 HSF AT5G16820 52.6 2.3e-59 226.9
Cec09g0708 . 77 289 HSF AT5G16820 54.0 5.3e-56 215.7
Cec08g1768 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Cec04g2104 . 62 244 HSF AT5G16820 50.3 1.5e-42 171.0
Cec03g0671 . 9 150 HSF AT5G16820 57.2 4.4e-42 169.5
Cec06g0919 . 10 176 HSF AT5G16820 51.6 5.7e-42 169.1
Cec02g1911 . 13 188 HSF AT5G16820 50.3 3.7e-41 166.4
Cec10g0148 . 13 515 HSF AT1G32330 53.0 1.1e-120 430.6
Cec05g0572 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Cec09g0708 . 65 285 HSF AT1G32330 51.8 9.7e-58 221.5
Cec07g0080 . 27 226 HSF AT1G32330 52.6 6.3e-57 218.8
Cec08g1768 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cec08g1659 . 20 117 HSF AT1G32330 72.4 2.9e-38 156.8
Cec05g2220 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
Cec07g0080 . 41 262 HSF AT3G02990 53.1 2.8e-62 236.5
Cec05g0572 . 38 241 HSF AT3G02990 57.6 1.8e-61 233.8
Cec09g0708 . 77 300 HSF AT3G02990 52.4 1.9e-58 223.8
Cec08g1768 . 43 242 HSF AT3G02990 51.7 5.7e-55 212.2
Cec06g0919 . 10 172 HSF AT3G02990 50.3 3.6e-41 166.4
Cec03g0671 . 9 158 HSF AT3G02990 54.3 1.4e-40 164.5
Cec05g0572 . 25 287 HSF AT2G26150 52.3 1.5e-68 256.9
Cec09g0708 . 65 284 HSF AT2G26150 54.3 5.0e-64 241.9
Cec10g0148 . 8 243 HSF AT2G26150 55.7 3.0e-61 232.6
Cec03g0671 . 5 156 HSF AT2G26150 51.3 2.3e-40 163.3
Cec02g1911 . 2 189 HSF AT4G18880 52.1 5.6e-51 198.7
Cec05g0355 . 6 462 HSF AT4G13980 52.6 8.1e-118 421.0
Cec02g1911 . 4 183 HSF AT4G13980 50.6 1.7e-43 174.1
Cec05g0572 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cec08g1768 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cec05g0572 . 26 354 HSF AT3G22830 50.1 1.8e-89 326.6
Cec07g0080 . 16 350 HSF AT3G22830 51.2 6.4e-87 318.2
Cec08g1768 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Cec10g0148 . 29 242 HSF AT3G22830 58.9 1.1e-62 237.7
Cec03g0671 . 13 158 HSF AT3G22830 52.0 1.9e-38 157.1
Cec09g0708 . 64 375 HSF AT3G51910 51.4 8.7e-72 267.3
Cec07g0080 . 26 322 HSF AT3G51910 52.2 1.1e-69 260.4
Cec08g1768 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Cec08g1768 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cec02g1911 . 5 140 HSF AT3G63350 56.6 3.8e-38 155.6
Cec11g0180 . 32 261 HSF AT5G54070 50.2 3.2e-52 202.6
Cec04g1370 . 46 334 HSF AT4G36990 52.4 1.0e-70 263.8
Cec05g0957 . 589 696 HSF AT4G36990 64.8 3.9e-38 155.6
Cec08g1659 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Cec01g0295 . 391 711 HSF AT4G11660 51.8 2.1e-79 293.1
Cec08g1659 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cec04g1370 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Cec03g1299 . 20 119 HSF AT4G11660 68.0 1.0e-38 157.9
Cec10g0148 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cec04g0460 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cec10g1593 . 14 222 HSF AT2G41690 55.3 1.0e-47 187.2
Cec08g1659 . 9 373 HSF AT1G46264 52.2 5.0e-88 321.6
Cec05g2220 . 1 239 HSF AT1G46264 63.8 6.3e-83 304.7
Cec10g0148 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Cec02g1911 . 5 115 HSF AT1G46264 63.1 5.2e-37 152.1
Cec10g1593 . 21 118 HSF AT1G46264 69.4 5.2e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004116 2 2 2 0 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28840 PF16363 GDP_Man_Dehyd 1.60E-64 CL0063 Cec TF