Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0304 ATGGCTGACCAAAAGCTTCAAATTAATGAAGGCCAAATAGACCAATCTCTTCATCCTCCTCCTCCAATATCTAAACCAATTGTCATTGACCCTTTTGTTTCTTCTGTCCCCACATCCCAAAATCCAAATCCTAAGTCACAAGAGGGTGAAGGTGAACAAAAACAACCTAATTTGCCTCAACAACTCCCACCACCACCTCCTTCATCTTCCATGGCTTCTTCTTCAACTAAGAAGCATTCTTTGTATAGAGGAATCCGCTGCCGGAGCGGCAAATGGGTGTCCGAGATACGCGAGCCACGTAAGACAACACGCATATGGCTTGGCACGTTTCCGACGGCAGAGATGGCTGCTGCCGCTTATGATGTTGCTGCCCTTGCCCTCAAAGGCGGCGATGCGGTTCTTAACTTCCCTTCCTCCATTCCCACCTACCCAGTTCCCGCATCGACTTCTCCGGTCGATATTCGCACAGCTGCCTCCACTGCCGCTGCTGCTACCGCTGCTAATGCGTTGAAGAAAGCTGCGTCGTCGACTTCCCCGGTTGACGTTTGCACTACGGAAGATAGTAGCAATACGACGATGGGAATGGAGGAGTTTGTGGATGAAGAAGAAATTTTTGGGATGCCGGGTTTGTTGGCGGACATGGCGGAGGGGATGATGGTGTCCCCGCCGAGAATAAACTCGCCACCACTGTCGGATGACTCGATGGAAAATTCTGATGGAACGGAAAGTTTATGGAGCTACTTTTGA 747 50.07 MADQKLQINEGQIDQSLHPPPPISKPIVIDPFVSSVPTSQNPNPKSQEGEGEQKQPNLPQQLPPPPPSSSMASSSTKKHSLYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVAALALKGGDAVLNFPSSIPTYPVPASTSPVDIRTAASTAAAATAANALKKAASSTSPVDVCTTEDSSNTTMGMEEFVDEEEIFGMPGLLADMAEGMMVSPPRINSPPLSDDSMENSDGTESLWSYF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3076825 3077571 + CePI673135_01g003040.1 Cec01g0304 193521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0304 248 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677(InterPro)
Cec01g0304 248 ProSiteProfiles AP2/ERF domain profile. 81 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0304 248 CDD AP2 80 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0304 248 MobiDBLite consensus disorder prediction 1 82 - -
Cec01g0304 248 Pfam AP2 domain 81 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0304 248 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0304 248 MobiDBLite consensus disorder prediction 33 57 - -
Cec01g0304 248 MobiDBLite consensus disorder prediction 227 248 - -
Cec01g0304 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 55 247 IPR045277 GO:0003700(InterPro)
Cec01g0304 248 FunFam Ethylene-responsive transcription factor 2 80 138 - -
Cec01g0304 248 SMART rav1_2 81 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0304 248 MobiDBLite consensus disorder prediction 223 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0304 Cec-Chr1:3076825 Cec05g0938 Cec-Chr5:8187321 1.60E-43 dispersed
Cec01g0304 Cec-Chr1:3076825 Cec01g0305 Cec-Chr1:3114058 6.00E-27 tandem
Cec10g0379 Cec-Chr10:4559771 Cec01g0304 Cec-Chr1:3076825 9.90E-50 transposed
Cec01g0304 Cec-Chr1:3076825 Cec05g0937 Cec-Chr5:8166824 2.80E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28841 PF00847 AP2 2.40E-10 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0304 - - - 0.0