Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec01g0305 | ATGGATTGGTTCGCTCAATTTTCTGACCCTCTTCCTTATTATGCTAATTGTAGTTACAAATCGGAATCCTCTTCCACGTTTTCAGACGCCGGAACACCTCCTCATACGGTCGCTAACTCCGACGAAGAAGTGATTCTGGCGTCCAACCGCCCAAAGAGGCGGGCCGGTCGCCGGGTTTTTAAAGAAACCAGACATCCGGTTTACAGAGGAGTACGCCGGAGGAATAACGACAAATGGGTTTGTGAGCTGAGGGAGCCAAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCAACGGCGGAGATGGCGGCGCGTGCGCACGATGTAGCGGCACTCGCGTTGAGAGGGAAATCGGCTTGTCTCAATTTCGCTGACTCTGCTTGGCGGTTCCCGATTCCGGCGACTGATGACCCGTCTGTGATCAGGGAGGCAGCGGCGAGGGCGGCAACTGAGTGTAAGGATGAGGAATGTAATGTGGGTCGGGAAGAGGACGACGGCGTTTCGGGTCAGGCGACGGCGGATCCTGACCGACCGGATTATATCGACGATGAGGCTTTGTCGAATATGCCGATGTTGCTTGCCAGCATGGCGGAAGGACTTCTTCTTTCTCCTCCATCTTTTTGTGTTAATGATGACGTGGAGTGGGATGATGTGGCAATGAATGATGATGTGTCATTGTGGAGCTTTTAG | 690 | 53.04 | MDWFAQFSDPLPYYANCSYKSESSSTFSDAGTPPHTVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNNDKWVCELREPNKKTRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPATDDPSVIREAAARAATECKDEECNVGREEDDGVSGQATADPDRPDYIDDEALSNMPMLLASMAEGLLLSPPSFCVNDDVEWDDVAMNDDVSLWSF | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3114058 | 3114747 | + | CePI673135_01g003050.1 | Cec01g0305 | 193522 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec01g0305 | 229 | FunFam | Ethylene-responsive transcription factor 2 | 66 | 125 | - | - | |
Cec01g0305 | 229 | ProSiteProfiles | AP2/ERF domain profile. | 67 | 124 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec01g0305 | 229 | Pfam | AP2 domain | 66 | 116 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec01g0305 | 229 | PRINTS | Ethylene responsive element binding protein signature | 90 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec01g0305 | 229 | PRINTS | Ethylene responsive element binding protein signature | 68 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec01g0305 | 229 | SMART | rav1_2 | 67 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec01g0305 | 229 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 23 | 229 | IPR045277 | GO:0003700(InterPro) | |
Cec01g0305 | 229 | CDD | AP2 | 68 | 126 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec01g0305 | 229 | Gene3D | AP2/ERF domain | 67 | 125 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec01g0305 | 229 | MobiDBLite | consensus disorder prediction | 159 | 178 | - | - | |
Cec01g0305 | 229 | SUPERFAMILY | DNA-binding domain | 67 | 126 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec01g0305 | Cec-Chr1:3114058 | Cec01g0567 | Cec-Chr1:5921218 | 5.60E-56 | dispersed | |
Cec01g0304 | Cec-Chr1:3076825 | Cec01g0305 | Cec-Chr1:3114058 | 6.00E-27 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28842 | PF00847 | AP2 | 1.60E-14 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec01g0305 | - | - | - | 0.0 |