Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0318 ATGCCTCCTTTGCCTCTCCAAGGGTCACCGGCTGCAGTGGTTGTCTTCTCTGATTTTTCCCCCATTTATCAACAATATATTTCAATCCTTACCCTTCAAGATTTACTCATAGAAGGTAAAGCTTTGAGAAGCAAAAATGTTCTCTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAGCTTTACGAGTTTTCAAATTGCAGTATGAACAAGACAATTGATCGCTATCAGGACAGAACCAAAGATTTAATGTCAAGCAACAACACAGTTGAAGATGTGCAGTTGGAGAAGGAATATGACTCCTTTAGCATGACTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGAAAACTGTTGGGAGATGGCTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAAAGGCAACTTGAAAGAAGCTTAAGCAGAATTAGGTCAAGAAAGTATCAAATGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTAGTACTGAGTCATCAAGAAAACAAGAAAGCAATCAAAGATCAGAATCATCAAATCATCAAGAGATAATGGATGTGGAAACTGAACTATTCATAGGACCACCAGAGAGAAGAAGCAACAATAATAATGGTTTCCTGTAG 681 38.62 MPPLPLQGSPAAVVVFSDFSPIYQQYISILTLQDLLIEGKALRSKNVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQDRTKDLMSSNNTVEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCSIDELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQESNQRSESSNHQEIMDVETELFIGPPERRSNNNNGFL 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3260637 3266399 + CePI673135_01g003180.1 Cec01g0318 193535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0318 226 SUPERFAMILY SRF-like 46 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g0318 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 47 197 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec01g0318 226 Gene3D - 43 103 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g0318 226 MobiDBLite consensus disorder prediction 182 203 - -
Cec01g0318 226 Coils Coil 131 151 - -
Cec01g0318 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 47 67 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g0318 226 ProSiteProfiles K-box domain profile. 97 187 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec01g0318 226 ProSiteProfiles MADS-box domain profile. 40 71 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g0318 226 Coils Coil 153 180 - -
Cec01g0318 226 MobiDBLite consensus disorder prediction 187 203 - -
Cec01g0318 226 Pfam K-box region 98 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0318 Cec-Chr1:3260637 Cec06g0025 Cec-Chr6:282325 1.40E-35 dispersed
Cec01g0318 Cec-Chr1:3260637 Cec05g0925 Cec-Chr5:8073960 1.20E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28844 PF01486 K-box 6.80E-22 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0318 - - - 0.0