Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0348 ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACCACACCAATTCCACAACAACAATAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGCCTCAAGCGTGACCGCGATGACGACGACCACCACACCAACAACTCCAACCCCAACAGCGCTGGCGATGGTGTCCCCGGCTCCACCGACGGAGAAATCACTCGGCGTCCTAGAGGTAGACCTGCTGGATCCAAAAACAAACCCAAACCCCCCATTATTATTACTCGCGACAGCGCCAACGCCCTTCGTACCCACGTCATCGAAGTCACCGACGGCTGCGATATCGTCGACAGCGTCGCTACCTTCGCTCGTCGACGACAACGTGGCGTTTGTATTATGAGTGGTACTGGTACTGTCACCAACGTCACTCTCCGTCAACCCGCTTCCCCCGGTGCAATTGTCAACTTACATGGCCGGTTCGAGATCTTATCTCTCGCCGGCTCTTTTCTTCCTCCTCCCGCTCCTCCAGCTGCTACTACTTTAACTATTTATCTCGCTGGCGGTCAAGGTCAAGTCGTCGGCGGTAGCGTCGTTGGTACTTTAATCGCTTCTGGTCCTGTCGTAATCATGGCTGCCTCCTTTAGTAACGCTGCTTATGAACGGCTTCCGTTGGAGGATGACGATCAGCCGCCGCTTCCGTCGCTACAAGGCGGCGGCGGAATTGGGTCACCGGATGAAGTTGGACAGTCTCAAACAGCGCAAACGGCGCATCATCAGCAGAATCAACAACAACAGCAACTTCTTAGCGACGGAAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTAAATTCAATTCAAATGCCACCGTCTGAAGCAGCGTATTGGGCAACTGCCCGACCTCCGTACTAA 912 53.84 MDSHSLPPPFHTRDFHLQPHQFHNNNNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPNSAGDGVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAAYWATARPPY 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3575333 3576244 - CePI673135_01g003480.1 Cec01g0348 193565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0348 303 CDD DUF296 102 168 IPR005175 -
Cec01g0348 303 MobiDBLite consensus disorder prediction 244 270 - -
Cec01g0348 303 MobiDBLite consensus disorder prediction 223 283 - -
Cec01g0348 303 MobiDBLite consensus disorder prediction 1 93 - -
Cec01g0348 303 ProSiteProfiles PPC domain profile profile. 98 237 IPR005175 -
Cec01g0348 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 229 - -
Cec01g0348 303 FunFam AT-hook motif nuclear-localized protein 101 228 - -
Cec01g0348 303 MobiDBLite consensus disorder prediction 19 34 - -
Cec01g0348 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 214 IPR005175 -
Cec01g0348 303 PIRSF ESCAROLA 12 303 IPR014476 GO:0003680(InterPro)
Cec01g0348 303 MobiDBLite consensus disorder prediction 35 53 - -
Cec01g0348 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 303 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cec01g0348 303 Gene3D - 101 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0348 Cec-Chr1:3575333 Cec06g0035 Cec-Chr6:362714 9.40E-75 dispersed
Cec01g0348 Cec-Chr1:3575333 Cec01g0352 Cec-Chr1:3658922 9.50E-19 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0348 - - - 0.0