Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec01g0348 | ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACCACACCAATTCCACAACAACAATAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGCCTCAAGCGTGACCGCGATGACGACGACCACCACACCAACAACTCCAACCCCAACAGCGCTGGCGATGGTGTCCCCGGCTCCACCGACGGAGAAATCACTCGGCGTCCTAGAGGTAGACCTGCTGGATCCAAAAACAAACCCAAACCCCCCATTATTATTACTCGCGACAGCGCCAACGCCCTTCGTACCCACGTCATCGAAGTCACCGACGGCTGCGATATCGTCGACAGCGTCGCTACCTTCGCTCGTCGACGACAACGTGGCGTTTGTATTATGAGTGGTACTGGTACTGTCACCAACGTCACTCTCCGTCAACCCGCTTCCCCCGGTGCAATTGTCAACTTACATGGCCGGTTCGAGATCTTATCTCTCGCCGGCTCTTTTCTTCCTCCTCCCGCTCCTCCAGCTGCTACTACTTTAACTATTTATCTCGCTGGCGGTCAAGGTCAAGTCGTCGGCGGTAGCGTCGTTGGTACTTTAATCGCTTCTGGTCCTGTCGTAATCATGGCTGCCTCCTTTAGTAACGCTGCTTATGAACGGCTTCCGTTGGAGGATGACGATCAGCCGCCGCTTCCGTCGCTACAAGGCGGCGGCGGAATTGGGTCACCGGATGAAGTTGGACAGTCTCAAACAGCGCAAACGGCGCATCATCAGCAGAATCAACAACAACAGCAACTTCTTAGCGACGGAAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTAAATTCAATTCAAATGCCACCGTCTGAAGCAGCGTATTGGGCAACTGCCCGACCTCCGTACTAA | 912 | 53.84 | MDSHSLPPPFHTRDFHLQPHQFHNNNNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPNSAGDGVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAAYWATARPPY | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3575333 | 3576244 | - | CePI673135_01g003480.1 | Cec01g0348 | 193565 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec01g0348 | 303 | CDD | DUF296 | 102 | 168 | IPR005175 | - | |
Cec01g0348 | 303 | MobiDBLite | consensus disorder prediction | 244 | 270 | - | - | |
Cec01g0348 | 303 | MobiDBLite | consensus disorder prediction | 223 | 283 | - | - | |
Cec01g0348 | 303 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - | |
Cec01g0348 | 303 | ProSiteProfiles | PPC domain profile profile. | 98 | 237 | IPR005175 | - | |
Cec01g0348 | 303 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 98 | 229 | - | - | |
Cec01g0348 | 303 | FunFam | AT-hook motif nuclear-localized protein | 101 | 228 | - | - | |
Cec01g0348 | 303 | MobiDBLite | consensus disorder prediction | 19 | 34 | - | - | |
Cec01g0348 | 303 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 102 | 214 | IPR005175 | - | |
Cec01g0348 | 303 | PIRSF | ESCAROLA | 12 | 303 | IPR014476 | GO:0003680(InterPro) | |
Cec01g0348 | 303 | MobiDBLite | consensus disorder prediction | 35 | 53 | - | - | |
Cec01g0348 | 303 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 30 | 303 | IPR014476 | GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER) | |
Cec01g0348 | 303 | Gene3D | - | 101 | 229 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec01g0348 | Cec-Chr1:3575333 | Cec06g0035 | Cec-Chr6:362714 | 9.40E-75 | dispersed | |
Cec01g0348 | Cec-Chr1:3575333 | Cec01g0352 | Cec-Chr1:3658922 | 9.50E-19 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec01g0348 | - | - | - | 0.0 |