Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0352 ATGGAGGGAAGGGATGGTGGCGGCGCAAGTAGTGGGGTTACTGTGGTAGGATCAGATGCTCCGTCCGAGTACAAAATAGCTCCGAGGACCTCCGATAACCCACCGCAGACTGGTGGATCAACGCCGCCGCCGGCGACTCAATCAACTTCGACGCCGTCGGCTTCAGCTCAAGTAACTGCGCAGCCTCCGCCGCCTACGGCGGCCTCCTCAGTACCGGGAAAGAAGAAAAGAGGGAGACCCAGAAAATATGGACCCGATGGCTCTGTTTCTATGGCTCTGTCTCCCAAGCCGATATCGTCATCAGTGCCGCCGCCGGTGATCGACTTCTCGACGGAGAAGAAGGGGAAAGTACGGCCGGCGAGCGCTGTGAGTAAAAGCAAGTTCGAAGTGGATAATTTAGGCGACTGGGTTCCATGTTCTGTTGGTGGAAATTTTACACCTCATATCATCACTGTCAATGCAGGGGAGGATGTCACCATGAAGATTATATCCTTTTCTCAACAAGGGCCTCGAGCTATATGCATTTTATCTGCGAATGGTGTGATCTCAAGTGTCACTCTTCGTCAGCCTGATTCATCTGGAGGAACTCTAACTTATGAGGGACGCTTTGAAATACTTTCCTTGTCTGGCTCATTCATGCCTAGTGACAACGGAGGAACTAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGATGGGCGTGTCGTAGGCGGTGGAGTAGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCTGGAAATCAACACGAGCAGAAACCGAAAAAGCCAAAACATGATACTATTTCACCGGCCCCGCCAACTGCTGCAATTCCAATATCTTGCGTTGATCCTAAGTCCAACCTCTCACCTTCCAGTTCCTTTCGTGGCGATAACTGGTCAATGCTGCCAACTGATTCAAGGAATAAGTCAACTGATATCAATGTATCCCTACCCAGTGCTTGA 993 50.25 MEGRDGGGASSGVTVVGSDAPSEYKIAPRTSDNPPQTGGSTPPPATQSTSTPSASAQVTAQPPPPTAASSVPGKKKRGRPRKYGPDGSVSMALSPKPISSSVPPPVIDFSTEKKGKVRPASAVSKSKFEVDNLGDWVPCSVGGNFTPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3658922 3662559 + CePI673135_01g003520.1 Cec01g0352 193569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0352 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 45 309 IPR039605 GO:0003680(InterPro)
Cec01g0352 330 MobiDBLite consensus disorder prediction 1 113 - -
Cec01g0352 330 MobiDBLite consensus disorder prediction 29 64 - -
Cec01g0352 330 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 265 - -
Cec01g0352 330 MobiDBLite consensus disorder prediction 264 330 - -
Cec01g0352 330 Gene3D - 147 276 - -
Cec01g0352 330 MobiDBLite consensus disorder prediction 294 330 - -
Cec01g0352 330 FunFam AT-hook motif nuclear-localized protein 1-like 147 278 - -
Cec01g0352 330 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 260 IPR005175 -
Cec01g0352 330 CDD DUF296 146 237 IPR005175 -
Cec01g0352 330 ProSiteProfiles PPC domain profile profile. 142 281 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0352 Cec-Chr1:3658922 Cec05g0259 Cec-Chr5:2132081 1.90E-89 dispersed
Cec01g0348 Cec-Chr1:3575333 Cec01g0352 Cec-Chr1:3658922 9.50E-19 proximal
Cec04g1122 Cec-Chr4:30785357 Cec01g0352 Cec-Chr1:3658922 8.80E-15 transposed
Cec11g0049 Cec-Chr11:632015 Cec01g0352 Cec-Chr1:3658922 2.00E-101 transposed
Cec01g0352 Cec-Chr1:3658922 Cec05g0895 Cec-Chr5:7744480 1.50E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0352 - - - 0.0