Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0381 AAAGGAAAGGAAAAAGGAAAGGCAGATCCAAGGAAGATAATGTCATCTTCTTCATCTTCTTCTTCTCCTACTTCTACTACTACTGCTACCACTACGACTACGTTATCTCAACAACACCACCTGCAACAGCAGCTGGACCACCACCTTCCTTCTCCTGAGCAACTCTGTTATGTCCATTGCAATATTTGCGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTTCGATGTGGACACTGCACGAATCTGCTTCCTGTCAACATGCGTGGCCTTCTTCTGCCTTCACCTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTAATTCTCATAACATTCTCGAAAATATTGCTACACCAAATTCCAATTATCTTATCAACCAGTTTGGAGCTACTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAACTCCCTAGGCCACCAGCCATTAACAGACCTCCGGAGAAGAGACAGAGAGTGCCTTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTTATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATACTCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCACTTCTAA 768 44.66 KGKEKGKADPRKIMSSSSSSSSPTSTTTATTTTTLSQQHHLQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPNSHNILENIATPNSNYLINQFGATTNNFGMPSRGVTDELPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDTQNVLMKDNGFYASANVGVSHF 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3962653 3965296 - CePI673135_01g003810.1 Cec01g0381 193598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0381 255 Gene3D High mobility group box domain 159 221 IPR036910 -
Cec01g0381 255 PANTHER PROTEIN YABBY 6-RELATED 52 225 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Cec01g0381 255 FunFam Axial regulator YABBY 161 232 - -
Cec01g0381 255 Pfam YABBY protein 52 216 IPR006780 GO:0007275(InterPro)
Cec01g0381 255 SUPERFAMILY HMG-box 161 209 IPR036910 -
Cec01g0381 255 MobiDBLite consensus disorder prediction 1 44 - -
Cec01g0381 255 MobiDBLite consensus disorder prediction 12 44 - -
Cec01g0381 255 CDD HMG-box_SF 170 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0381 Cec-Chr1:3962653 Cec02g2367 Cec-Chr2:40915706 1.20E-43 dispersed
Cec01g0381 Cec-Chr1:3962653 Cec10g0303 Cec-Chr10:3720703 6.50E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28852 PF04690 YABBY 7.00E-70 CL0114 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0381 K25796 - csv:101214748 429.869