Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0407 ATGGCATTCCTTTTTCCCTCATTTTTCTTCTCCACTTTCTTTCTCCTATGCTTTTCCGCCGCCGCCAAGCACCTCCACCACTGGGTCGGACCCACCGGACACCGCCTCATCAAAGTGAATGTTAACGGCGGCTCCGATGAGTTTCTCTCCGTGCAAGCCGCCGTGGATGCAGTTCCCGATTACAATACCGTCAACACCGTCATCCGAATTAGCCCCGGATATTACGTGGAGAAGGTGGTGGTGCCGGCGACGAAGCCGTACATAACATTTGAAGGAGGAGGAAAAGAGACGACGGTGATAGAATGGCACGACCGGGCAGGTGACCGTGGTCCCAGCGGGCAGCAACTCCGTACTTATAGAACAGCCTCCGTTACCGTTTTTGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAAGAATACGGCACCGGCGCCGCTGCCCGGAATGCAAGGGTGGCAGGCGGCGGCGTTCCGAATCTCCGGCGACAAAGCCTACTTTTCCGGCTGCGGATTCTACGGCGCACAAGATACGCTTTGCGACGACGCCGGCCGCCATTACTTCAAAGAATGCTACATTGAAGGCTCCATAGACTTCATCTTTGGAAATGGGCGTTCCATGTATAAGGATTGTGAGCTGCACTCAATCGCCACCCGGTTCGGTTCCATAGCGGCCCAAGATAGAAACTCGCCATCTGAGAAAACCGGGTTTGCTTTTCTCCGGTGCAAGGTGACCGGTTCAGGACCTGTGTACGTGGGGCGAGCCATGGGCCAATACTCCAGAATCGTCTATGCGTATACTTACTTTGATGATGTGGTGGCCCACGGTGGATGGGATGACTGGGACCACGTCGGCAACAAAAACAAGACTGTATTTTTTGGAGTATACAAGTGCTGGGGGCCAGGGGCAAGTAAAGTAAAGGGAGTATCATGGGCTAGAGAATTGGAGTATGAAGAGGCCCATCCATTTCTTGCCAAAAGCTTTGTCAATGGCAGACACTGGATTGCACCCTCCGATGCTTAG 1020 53.24 MAFLFPSFFFSTFFLLCFSAAAKHLHHWVGPTGHRLIKVNVNGGSDEFLSVQAAVDAVPDYNTVNTVIRISPGYYVEKVVVPATKPYITFEGGGKETTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPSEKTGFAFLRCKVTGSGPVYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHVGNKNKTVFFGVYKCWGPGASKVKGVSWARELEYEEAHPFLAKSFVNGRHWIAPSDA 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4278896 4285859 + CePI673135_01g004070.1 Cec01g0407 193624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0407 339 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 15 335 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cec01g0407 339 FunFam Pectinesterase 32 336 - -
Cec01g0407 339 Pfam Pectinesterase 42 330 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cec01g0407 339 ProSitePatterns Pectinesterase signature 2. 192 201 IPR033131 -
Cec01g0407 339 Gene3D - 35 338 IPR012334 -
Cec01g0407 339 SUPERFAMILY Pectin lyase-like 37 336 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0407 Cec-Chr1:4278896 Cec03g1665 Cec-Chr3:34845096 8.30E-88 dispersed
Cec01g0407 Cec-Chr1:4278896 Cec11g0451 Cec-Chr11:4766401 8.90E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0407 - - - 0.0