Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0441 ATGTACCAGAGCACTAAAACAGAGTCCGATTTTGGTTTTCTAGACCCAATTCGCCGCCATTTATTGGGGGAATCGGAGATTTCCGCCACCAACGCCGCCGCTCCCGGCGGAAGACCCACTCCCGTTTTCAGTCGGAGTGGTAGTTTCAGTAGCTTAATTCCATGTCTTGAAGACAATTGGGGCGATTTGCCTCTCAAGGTTGACGACTCGGAAGATATGATGCTTGCCGCCGTTCTCCGAGATGCCGTCGGTGCCGGATGGGTTCCGTCGCTTGGAAGCTGCGATTTTGGGTTTTCGACGGTGAAATCAGAGCCGGAGGTGCTTCCGGTGAGTTACCCGGTGGTGCTACCGAATGTGACGGTGAAGCCGACGGTGGTACCGGCGAAAGGGAAGCATTATAGAGGAGTGCGGCAACGGCCGTGGGGGAAATTCGCAGCCGAGATTCGAGACCCGGCGAAAAATGGTGCTAGAGTTTGGCTTGGAACTTATGAGACGGCAGAGGATGCGGCGTTAGCTTATGATCGAGCGGCTTATCGAATGCGAGGCTCAAGGGCTCTGCTAAATTTTCCCCTCCGTGTCAACTCCGGCGAGCCCGAACCGGTTAGGGTCACGTCGAAGCGATCGTCACTGGAGGTTTCATCGTCGCCGAAGCGGCCGAAGAAAGTCGGCTCCGCCGTAGAAGGTGGAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGGCAGCTGTTTGTAAGCCAATGCCAACATTTAGCCAATAATTATAAAAAGCTCTTTTAA 789 53.87 MYQSTKTESDFGFLDPIRRHLLGESEISATNAAAPGGRPTPVFSRSGSFSSLIPCLEDNWGDLPLKVDDSEDMMLAAVLRDAVGAGWVPSLGSCDFGFSTVKSEPEVLPVSYPVVLPNVTVKPTVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSSLEVSSSPKRPKKVGSAVEGGGVQVEQQVASFTHGGQLFVSQCQHLANNYKKLF 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4578912 4579700 + CePI673135_01g004410.1 Cec01g0441 193658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0441 262 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0441 262 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0441 262 SMART rav1_2 132 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0441 262 Pfam AP2 domain 132 183 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0441 262 Gene3D AP2/ERF domain 131 193 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0441 262 ProSiteProfiles AP2/ERF domain profile. 132 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0441 262 CDD AP2 131 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0441 262 SUPERFAMILY DNA-binding domain 132 192 IPR016177 GO:0003677(InterPro)
Cec01g0441 262 MobiDBLite consensus disorder prediction 197 227 - -
Cec01g0441 262 PANTHER DNA-BINDING DOMAIN 115 214 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cec01g0441 262 FunFam Ethylene-responsive transcription factor 2 131 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0441 Cec-Chr1:4578912 Cec10g0243 Cec-Chr10:2705351 4.10E-26 dispersed
Cec01g0441 Cec-Chr1:4578912 Cec10g0242 Cec-Chr10:2672790 3.10E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28857 PF00847 AP2 9.90E-15 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0441 K09286 - csv:101221583 439.113